FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6326, 286 aa
  1>>>pF1KB6326 286 - 286 aa - 286 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4382+/-0.000329; mu= 10.3739+/- 0.021
 mean_var=119.2092+/-22.876, 0's: 0 Z-trim(117.9): 2  B-trim: 43 in 1/57
 Lambda= 0.117468
 statistics sampled from 30416 (30418) to 30416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.357), width:  16
 Scan time:  7.800

The best scores are:                                      opt bits E(85289)
NP_003135 (OMIM: 600868) translocon-associated pro ( 286) 1862 326.3 4.2e-89
NP_001278937 (OMIM: 600868) translocon-associated  ( 218)  822 149.9 3.9e-36


>>NP_003135 (OMIM: 600868) translocon-associated protein  (286 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 1720.6  bits: 326.3 E(85289): 4.2e-89
Smith-Waterman score: 1862; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286)

               10        20        30        40        50        60
pF1KB6 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
              190       200       210       220       230       240

              250       260       270       280      
pF1KB6 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
              250       260       270       280      

>>NP_001278937 (OMIM: 600868) translocon-associated prot  (218 aa)
 initn: 860 init1: 822 opt: 822  Z-score: 769.7  bits: 149.9 E(85289): 3.9e-36
Smith-Waterman score: 1260; 76.2% identity (76.2% similar) in 286 aa overlap (1-286:1-218)

               10        20        30        40        50        60
pF1KB6 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLLPRLLLLLLLVFPATVLFRGGPRGLLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESL
       :::::::::::::::::::::::::::::::::                           
NP_001 PTDLVEDKEEEDVSGEPEASPSADTTILFVKGE---------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB6 DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDL
                                                :::::::::::::::::::
NP_001 -----------------------------------------EPMGGRPFGLVINLNYKDL
                                                    100       110  

              190       200       210       220       230       240
pF1KB6 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQK
            120       130       140       150       160       170  

              250       260       270       280      
pF1KB6 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEMGTSSQNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE
            180       190       200       210        




286 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:42:05 2016 done: Fri Nov  4 22:42:06 2016
 Total Scan time:  7.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]