FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6324, 282 aa
  1>>>pF1KB6324 282 - 282 aa - 282 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1377+/-0.000962; mu= 15.8272+/- 0.058
 mean_var=61.0826+/-11.959, 0's: 0 Z-trim(104.1): 10  B-trim: 0 in 0/49
 Lambda= 0.164103
 statistics sampled from 7749 (7752) to 7749 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.238), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS3905.1 RAD1 gene_id:5810|Hs108|chr5            ( 282) 1866 450.3  7e-127


>>CCDS3905.1 RAD1 gene_id:5810|Hs108|chr5                 (282 aa)
 initn: 1866 init1: 1866 opt: 1866  Z-score: 2391.4  bits: 450.3 E(32554): 7e-127
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB6 MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 ANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCK
              190       200       210       220       230       240

              250       260       270       280  
pF1KB6 VSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES
       ::::::::::::::::::::::::::::::::::::::::::
CCDS39 VSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES
              250       260       270       280  




282 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:10:24 2016 done: Fri Nov  4 19:10:25 2016
 Total Scan time:  2.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]