FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6317, 260 aa
  1>>>pF1KB6317 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5390+/-0.00084; mu= -0.0904+/- 0.051
 mean_var=142.0099+/-28.187, 0's: 0 Z-trim(111.3): 18  B-trim: 0 in 0/52
 Lambda= 0.107625
 statistics sampled from 12241 (12248) to 12241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS3006.1 EAF2 gene_id:55840|Hs108|chr3           ( 260) 1710 276.4 1.3e-74
CCDS2626.1 EAF1 gene_id:85403|Hs108|chr3           ( 268)  667 114.5 7.7e-26


>>CCDS3006.1 EAF2 gene_id:55840|Hs108|chr3                (260 aa)
 initn: 1710 init1: 1710 opt: 1710  Z-score: 1452.8  bits: 276.4 E(32554): 1.3e-74
Smith-Waterman score: 1710; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QYRKEQQQQQMWNSARTPNLVKHSPSEDKMSPASPIDDIERELKAEASLMDQMSSCDSSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQYRIPDIDASHNRFRDNSGL
              190       200       210       220       230       240

              250       260
pF1KB6 LMNTLRNDLQLSESGSDSDD
       ::::::::::::::::::::
CCDS30 LMNTLRNDLQLSESGSDSDD
              250       260

>>CCDS2626.1 EAF1 gene_id:85403|Hs108|chr3                (268 aa)
 initn: 865 init1: 597 opt: 667  Z-score: 577.3  bits: 114.5 E(32554): 7.7e-26
Smith-Waterman score: 847; 54.7% identity (73.2% similar) in 276 aa overlap (1-260:1-268)

               10        20        30        40        50        60
pF1KB6 MNSAAGFSHLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVT
       ::..:.   :::.:. :.:::::::.:: .:::.:::::::::::: :: :.::.:..::
CCDS26 MNGTAN-PLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVT
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 ITLPNIEGSTPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKI
       ::::.: :::::.:::::.:.:: :.:.:::::::::  ::::::.: :::::.::::::
CCDS26 ITLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKI
      60        70        80        90       100       110         

              130                      140       150       160     
pF1KB6 QYRKEQQQQQMWNSA---------------RTPNLVKHSPSEDKMSPASPIDDIERELKA
       : : :::  .  ...               . :   : :: .:. ::   .:::.:::.:
CCDS26 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRA
     120       130       140       150       160       170         

         170       180       190       200       210       220     
pF1KB6 EASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRI
       :.....:::: ..::.: : :::.:.:.::.:  ::       .:     .:.  : :  
CCDS26 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED-------NGPASPPQPSHQQPYNS
     180       190       200       210              220       230  

          230       240       250       260
pF1KB6 PDIDASHNRFRDNSGLLMNTLRNDLQLSESGSDSDD
           :. .   ..:. ::::::::::::::::::::
CCDS26 RPAVANGTSRPQGSNQLMNTLRNDLQLSESGSDSDD
            240       250       260        




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:25:22 2016 done: Fri Nov  4 19:25:23 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]