FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6314, 281 aa
  1>>>pF1KB6314 281 - 281 aa - 281 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8707+/-0.000418; mu= -17.9065+/- 0.026
 mean_var=544.0041+/-111.218, 0's: 0 Z-trim(125.1): 16  B-trim: 0 in 0/61
 Lambda= 0.054989
 statistics sampled from 48044 (48084) to 48044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.564), width:  16
 Scan time:  7.610

The best scores are:                                      opt bits E(85289)
NP_000630 (OMIM: 134638,211980,601859) tumor necro ( 281) 1970 169.9 4.9e-42
NP_001289675 (OMIM: 134638,211980,601859) tumor ne ( 127)  882 83.2 2.7e-16


>>NP_000630 (OMIM: 134638,211980,601859) tumor necrosis   (281 aa)
 initn: 1970 init1: 1970 opt: 1970  Z-score: 875.7  bits: 169.9 E(85289): 4.9e-42
Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA
              190       200       210       220       230       240

              250       260       270       280 
pF1KB6 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL
       :::::::::::::::::::::::::::::::::::::::::
NP_000 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL
              250       260       270       280 

>>NP_001289675 (OMIM: 134638,211980,601859) tumor necros  (127 aa)
 initn: 1357 init1: 882 opt: 882  Z-score: 413.6  bits: 83.2 E(85289): 2.7e-16
Smith-Waterman score: 882; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:  
NP_001 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELREATPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
                                                                   
NP_001 HPLKKRS                                                     
                                                                   




281 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:56:34 2016 done: Sat Nov  5 07:56:36 2016
 Total Scan time:  7.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]