FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6314, 281 aa
  1>>>pF1KB6314 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1930+/-0.00109; mu= -7.8864+/- 0.066
 mean_var=472.4123+/-95.898, 0's: 0 Z-trim(117.2): 20  B-trim: 472 in 1/52
 Lambda= 0.059008
 statistics sampled from 17907 (17924) to 17907 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.551), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS1304.1 FASLG gene_id:356|Hs108|chr1            ( 281) 1970 181.0 8.6e-46
CCDS76243.1 FASLG gene_id:356|Hs108|chr1           ( 127)  882 88.0 3.9e-18


>>CCDS1304.1 FASLG gene_id:356|Hs108|chr1                 (281 aa)
 initn: 1970 init1: 1970 opt: 1970  Z-score: 935.6  bits: 181.0 E(32554): 8.6e-46
Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWA
              190       200       210       220       230       240

              250       260       270       280 
pF1KB6 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL
       :::::::::::::::::::::::::::::::::::::::::
CCDS13 RSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL
              250       260       270       280 

>>CCDS76243.1 FASLG gene_id:356|Hs108|chr1                (127 aa)
 initn: 1357 init1: 882 opt: 882  Z-score: 439.1  bits: 88.0 E(32554): 3.9e-18
Smith-Waterman score: 882; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MQQPFNYPYPQIYWVDSSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELRESTSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:  
CCDS76 PPLPPLPLPPLKKRGNHSTGLCLLVMFFMVLVALVGLGLGMFQLFHLQKELAELREATPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MHTASSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGG
                                                                   
CCDS76 HPLKKRS                                                     
                                                                   




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:56:34 2016 done: Sat Nov  5 07:56:34 2016
 Total Scan time:  2.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]