FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6308, 280 aa
  1>>>pF1KB6308 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6507+/-0.00107; mu= 13.2208+/- 0.064
 mean_var=68.0918+/-13.423, 0's: 0 Z-trim(103.1): 25  B-trim: 0 in 0/52
 Lambda= 0.155427
 statistics sampled from 7254 (7257) to 7254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.223), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7           ( 280) 1825 418.4 2.9e-117
CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6         ( 278)  938 219.5 2.2e-57


>>CCDS34635.1 HUS1 gene_id:3364|Hs108|chr7                (280 aa)
 initn: 1825 init1: 1825 opt: 1825  Z-score: 2218.7  bits: 418.4 E(32554): 2.9e-117
Smith-Waterman score: 1825; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB6 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKLLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKLLQF
              190       200       210       220       230       240

              250       260       270       280
pF1KB6 LAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS
       ::::::::::::::::::::::::::::::::::::::::
CCDS34 LAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS
              250       260       270       280

>>CCDS4470.1 HUS1B gene_id:135458|Hs108|chr6              (278 aa)
 initn: 771 init1: 771 opt: 938  Z-score: 1143.9  bits: 219.5 E(32554): 2.2e-57
Smith-Waterman score: 938; 49.3% identity (81.2% similar) in 282 aa overlap (1-279:1-278)

               10        20        30        40        50          
pF1KB6 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVS---MWCE
       :::::::.  .::. : ..:. .:.:::.:.::. ::.: :      ..::.    .:::
CCDS44 MKFRAKITGKGCLELFIHVSGTVARLAKVCVLRVRPDSLCF---GPAGSGGLHEARLWCE
               10        20        30        40           50       

        60        70        80        90       100       110       
pF1KB6 LEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSV
       ..: . :..:.::::: . .::.::::.:.:::: ..: .: .::..::.:. : :::.:
CCDS44 VRQ-GAFQQFRMEGVSEDLDEIHLELTAEHLSRAARSAAGASSLKLQLTHKRRPSLTVAV
        60         70        80        90       100       110      

       120       130       140       150       160       170       
pF1KB6 ELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNIS
       ::.:  . .: :.::.:..:.::..:.:   : .   :.:: ::  .:..:.::.: :..
CCDS44 ELVSSLGRARSVVHDLPVRVLPRRVWRDCLPPSLRASDASIRLPRWRTLRSIVERMANVG
        120       130       140       150       160       170      

       180       190       200       210       220       230       
pF1KB6 NHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKL
       .:...::::.:...:.::::.: . ..::.::::: .. .. :.:..: :..:..: :::
CCDS44 SHVLVEANLSGRMTLSIETEVVSIQSYFKNLGNPPQSAVGVPENRDLESMVQVRVDNRKL
        180       190       200       210       220       230      

       240       250       260       270       280
pF1KB6 LQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS
       :::: :::..:: ::::: .: .... :..:::::::::::: 
CCDS44 LQFLEGQQIHPTTALCNIWDNTLLQLVLVQEDVSLQYFIPAL 
        240       250       260       270         




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:29:18 2016 done: Fri Nov  4 20:29:18 2016
 Total Scan time:  2.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]