Result of FASTA (ccds) for
pF1KB6307
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6307, 258 aa
1>>>pF1KB6307 258 - 258 aa - 258 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3865+/-0.000724; mu= 12.9071+/- 0.044
mean_var=156.5482+/-30.488, 0's: 0 Z-trim(115.6): 168 B-trim: 0 in 0/51
Lambda= 0.102506
statistics sampled from 16235 (16405) to 16235 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.491), width: 16
Scan time: 1.230
The best scores are: opt bits E(33420)
CCDS1575.1 RHOU gene_id:58480|Hs109|chr1 ( 258) 1796 276.3 1.5e-74
CCDS10068.1 RHOV gene_id:171177|Hs109|chr15 ( 236) 889 142.2 3.3e-34
CCDS221.1 CDC42 gene_id:998|Hs109|chr1 ( 191) 769 124.3 6.3e-29
CCDS222.1 CDC42 gene_id:998|Hs109|chr1 ( 191) 769 124.3 6.3e-29
CCDS5348.1 RAC1 gene_id:5879|Hs109|chr7 ( 192) 715 116.3 1.6e-26
CCDS13945.1 RAC2 gene_id:5880|Hs109|chr22 ( 192) 710 115.6 2.7e-26
CCDS11798.1 RAC3 gene_id:5881|Hs109|chr17 ( 192) 703 114.5 5.5e-26
CCDS33191.1 RHOQ gene_id:23433|Hs109|chr2 ( 205) 683 111.6 4.4e-25
CCDS9757.1 RHOJ gene_id:57381|Hs109|chr14 ( 214) 661 108.4 4.3e-24
CCDS7748.1 RHOG gene_id:391|Hs109|chr11 ( 191) 635 104.5 5.8e-23
CCDS854.1 RHOC gene_id:389|Hs109|chr1 ( 193) 605 100.1 1.3e-21
CCDS2795.1 RHOA gene_id:387|Hs109|chr3 ( 193) 593 98.3 4.3e-21
CCDS1699.1 RHOB gene_id:388|Hs109|chr2 ( 196) 593 98.3 4.4e-21
CCDS8155.1 RHOD gene_id:29984|Hs109|chr11 ( 210) 527 88.6 4e-18
CCDS9222.1 RHOF gene_id:54509|Hs109|chr12 ( 211) 522 87.8 6.6e-18
CCDS82775.1 RHOA gene_id:387|Hs109|chr3 ( 187) 497 84.1 8e-17
CCDS2190.1 RND3 gene_id:390|Hs109|chr2 ( 244) 495 83.9 1.2e-16
CCDS11452.1 RND2 gene_id:8153|Hs109|chr17 ( 227) 481 81.8 4.7e-16
CCDS3458.1 RHOH gene_id:399|Hs109|chr4 ( 191) 471 80.2 1.2e-15
CCDS8771.1 RND1 gene_id:27289|Hs109|chr12 ( 232) 438 75.4 3.9e-14
CCDS5349.1 RAC1 gene_id:5879|Hs109|chr7 ( 211) 377 66.4 1.9e-11
>>CCDS1575.1 RHOU gene_id:58480|Hs109|chr1 (258 aa)
initn: 1796 init1: 1796 opt: 1796 Z-score: 1452.3 bits: 276.3 E(33420): 1.5e-74
Smith-Waterman score: 1796; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB6 MPPQQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MPPQQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 KPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTP
190 200 210 220 230 240
250
pF1KB6 DKMKNLSKSWWKKYCCFV
::::::::::::::::::
CCDS15 DKMKNLSKSWWKKYCCFV
250
>>CCDS10068.1 RHOV gene_id:171177|Hs109|chr15 (236 aa)
initn: 935 init1: 655 opt: 889 Z-score: 727.9 bits: 142.2 E(33420): 3.3e-34
Smith-Waterman score: 905; 54.4% identity (76.1% similar) in 259 aa overlap (1-258:1-236)
10 20 30 40 50 60
pF1KB6 MPPQQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAV
:::.. . : : .:: ::::. . : : :.::::::::::
CCDS10 MPPRELSEAEPPPLRAPTPPPRRRSA------PPE------------LGIKCVLVGDGAV
10 20 30 40
70 80 90 100 110 120
pF1KB6 GKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN
::.::.:::: ::::..: :::.:.::. : ::: :::..: :::::..::.:: ::: .
CCDS10 GKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPD
50 60 70 80 90 100
130 140 150 160 170
pF1KB6 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKC-K
::.:: :::::.::::::..:::.:::: : :.::..:::::.:::.::.:::.::. .
CCDS10 TDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 EKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRT
: :::. :. ::.:.: :.:::::::::::::::.::...:... .. ..:.
CCDS10 EGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKG--
170 180 190 200 210 220
240 250
pF1KB6 PDKMKNLSKSWWKKYCCFV
...::. :::. :::
CCDS10 ---VRTLSRCRWKKFFCFV
230
>>CCDS221.1 CDC42 gene_id:998|Hs109|chr1 (191 aa)
initn: 792 init1: 753 opt: 769 Z-score: 633.0 bits: 124.3 E(33420): 6.3e-29
Smith-Waterman score: 769; 60.1% identity (85.1% similar) in 188 aa overlap (50-236:4-186)
20 30 40 50 60 70
pF1KB6 PPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYI
.:::.::::::::: :..::::: .:.::.
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYV
10 20 30
80 90 100 110 120 130
pF1KB6 PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV
::.:::....: . :.: : : :::::...:.:::: : .::.::.::::::::::.::
CCDS22 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 SEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV-PEEAAKLCAEEIKAA
.::::::: ::::.:..::::: :::.: ... .: : :.::. :: : :: :...::.
CCDS22 KEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL-ARDLKAV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 SYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCFV
.:.::::::::.::.::: ::.:... .::::.
CCDS22 KYVECSALTQKGLKNVFDEAILAALE----PPEPKKSRRCVLL
160 170 180 190
>>CCDS222.1 CDC42 gene_id:998|Hs109|chr1 (191 aa)
initn: 786 init1: 763 opt: 769 Z-score: 633.0 bits: 124.3 E(33420): 6.3e-29
Smith-Waterman score: 769; 60.2% identity (86.0% similar) in 186 aa overlap (50-234:4-186)
20 30 40 50 60 70
pF1KB6 PPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYI
.:::.::::::::: :..::::: .:.::.
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYV
10 20 30
80 90 100 110 120 130
pF1KB6 PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV
::.:::....: . :.: : : :::::...:.:::: : .::.::.::::::::::.::
CCDS22 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 SEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV-PEEAAKLCAEEIKAA
.::::::: ::::.:..::::: :::.: ... .: : :.::. :: : :: :...::.
CCDS22 KEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL-ARDLKAV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 SYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCFV
.:.:::::::..::.::: ::.:... .:: ::.
CCDS22 KYVECSALTQRGLKNVFDEAILAALEPPETQ--PKRKCCIF
160 170 180 190
>>CCDS5348.1 RAC1 gene_id:5879|Hs109|chr7 (192 aa)
initn: 707 init1: 707 opt: 715 Z-score: 589.9 bits: 116.3 E(33420): 1.6e-26
Smith-Waterman score: 715; 56.1% identity (79.7% similar) in 187 aa overlap (48-234:2-188)
20 30 40 50 60 70
pF1KB6 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
...:::.::::::::: :..:::::..: :
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGE
10 20 30
80 90 100 110 120 130
pF1KB6 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
::::.:::.:: : :::.:: : : :::::...:.:::: : .::.::.:::.:::.::.
CCDS53 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
:: :: ::.: :::..:::::::. :::.: .. .: . : :. . :.:: :
CCDS53 NVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
..:.:::::::..:: ::: :: : . .... .:
CCDS53 VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL
160 170 180 190
pF1KB6 V
>>CCDS13945.1 RAC2 gene_id:5880|Hs109|chr22 (192 aa)
initn: 723 init1: 705 opt: 710 Z-score: 585.9 bits: 115.6 E(33420): 2.7e-26
Smith-Waterman score: 710; 55.9% identity (80.1% similar) in 186 aa overlap (48-233:2-187)
20 30 40 50 60 70
pF1KB6 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
...:::.::::::::: :..:::::..: :
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGE
10 20 30
80 90 100 110 120 130
pF1KB6 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
::::.:::.:: : ::..:: : : :::::...:.:::: : .::.::.:::.:::.:..
CCDS13 YIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
:: :: ::.: :::..:::::::. :::.: .. .: . : :. . :.:: .
CCDS13 NVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
..:.:::::::..:: ::: :: : . . :.:: .
CCDS13 VKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL
160 170 180 190
pF1KB6 V
>>CCDS11798.1 RAC3 gene_id:5881|Hs109|chr17 (192 aa)
initn: 703 init1: 703 opt: 703 Z-score: 580.3 bits: 114.5 E(33420): 5.5e-26
Smith-Waterman score: 703; 55.6% identity (78.6% similar) in 187 aa overlap (48-234:2-188)
20 30 40 50 60 70
pF1KB6 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
...:::.::::::::: :..:::::..: :
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGE
10 20 30
80 90 100 110 120 130
pF1KB6 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
::::.:::.:: : :::.:: : : :::::...:.:::: : .::.::.:::.:::.::.
CCDS11 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
:: :: ::.: :::..::.::::. :::.: .. .: : :. . :.:: .
CCDS11 NVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
..:.:::::::..:: ::: :: : . ... ::
CCDS11 VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKPGKKCTVF
160 170 180 190
pF1KB6 V
>>CCDS33191.1 RHOQ gene_id:23433|Hs109|chr2 (205 aa)
initn: 713 init1: 680 opt: 683 Z-score: 563.9 bits: 111.6 E(33420): 4.4e-25
Smith-Waterman score: 683; 55.6% identity (81.7% similar) in 180 aa overlap (45-221:2-181)
20 30 40 50 60 70
pF1KB6 EAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRG---VKCVLVGDGAVGKTSLVVSYTT
:.: : .:::.::::::::: :..::..
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYAN
10 20 30
80 90 100 110 120 130
pF1KB6 NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVV
...: ::.::.::.... :.: :. : : :::::...:.:::: : ::.::.:::::
CCDS33 DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 SPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLC
.:.:::::.:.::::.. . :..:..:.::: :::.: :.: .:. ::::. : ..
CCDS33 NPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 AEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWW
:.:: : :.::::::::.:: ::: ::.:
CCDS33 AKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT
160 170 180 190 200
>>CCDS9757.1 RHOJ gene_id:57381|Hs109|chr14 (214 aa)
initn: 657 init1: 636 opt: 661 Z-score: 546.1 bits: 108.4 E(33420): 4.3e-24
Smith-Waterman score: 661; 50.2% identity (76.1% similar) in 205 aa overlap (34-238:6-203)
10 20 30 40 50 60
pF1KB6 QQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKT
: .. : :. : . .:::.:::::::::
CCDS97 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKT
10 20 30
70 80 90 100 110 120
pF1KB6 SLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI
:..::.....: ::.::.::.....:.: :. : : :::::.....:::: : :::.
CCDS97 CLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV
::.:::::.:.:..::.:.::::.. :..: .:.::: :::.: :.: .: ::::.
CCDS97 FLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 PEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKM
: . :. : : :.::::::::.:: ::: ::. : .:::.:.:
CCDS97 TYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAIL-------TIFHPKKKKKRCSEGH
160 170 180 190 200
250
pF1KB6 KNLSKSWWKKYCCFV
CCDS97 SCCSII
210
>>CCDS7748.1 RHOG gene_id:391|Hs109|chr11 (191 aa)
initn: 630 init1: 630 opt: 635 Z-score: 525.9 bits: 104.5 E(33420): 5.8e-23
Smith-Waterman score: 635; 52.3% identity (79.3% similar) in 174 aa overlap (48-221:2-175)
20 30 40 50 60 70
pF1KB6 PVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE
...:::.::::::::: :.. ::::..: :
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKE
10 20 30
80 90 100 110 120 130
pF1KB6 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ
::::.:::.:: .:::: : :.: :::::.:.:.:: : : .:..:..:::..:: :..
CCDS77 YIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB6 NVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKA
:: .:: ::. ::: .::.::::..::: . .: .: . . :. . .. :..:.:
CCDS77 NVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPDTLRRLKEQGQAPITPQQGQALAKQIHA
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB6 ASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCF
. :.::::: : ..:::: :. :
CCDS77 VRYLECSALQQDGVKEVFAEAVRAVLNPTPIKRGRSCILL
160 170 180 190
258 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:30:04 2019 done: Thu Oct 24 21:30:05 2019
Total Scan time: 1.230 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]