FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6304, 278 aa
  1>>>pF1KB6304 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3265+/-0.000487; mu= 12.7955+/- 0.030
 mean_var=154.0389+/-31.658, 0's: 0 Z-trim(113.2): 44  B-trim: 226 in 1/54
 Lambda= 0.103338
 statistics sampled from 22379 (22386) to 22379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.262), width:  16
 Scan time:  7.890

The best scores are:                                      opt bits E(85289)
NP_612452 (OMIM: 608775) HAUS augmin-like complex  ( 278) 1728 269.4 5.3e-72


>>NP_612452 (OMIM: 608775) HAUS augmin-like complex subu  (278 aa)
 initn: 1728 init1: 1728 opt: 1728  Z-score: 1413.7  bits: 269.4 E(85289): 5.3e-72
Smith-Waterman score: 1728; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KB6 MEPQEERETQVAAWLKKIFGDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIEDLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MEPQEERETQVAAWLKKIFGDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIEDLKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 KASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 DLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLES
              190       200       210       220       230       240

              250       260       270        
pF1KB6 YLDLMPNPSLAQVKIEEAKRELDSIEAELTRRVDMMEL
       ::::::::::::::::::::::::::::::::::::::
NP_612 YLDLMPNPSLAQVKIEEAKRELDSIEAELTRRVDMMEL
              250       260       270        




278 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:34:00 2016 done: Sat Nov  5 00:34:01 2016
 Total Scan time:  7.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]