FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6304, 278 aa
  1>>>pF1KB6304 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0408+/-0.00119; mu= 8.0314+/- 0.071
 mean_var=130.9800+/-26.306, 0's: 0 Z-trim(105.5): 35  B-trim: 69 in 1/50
 Lambda= 0.112065
 statistics sampled from 8463 (8472) to 8463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS11928.1 HAUS1 gene_id:115106|Hs108|chr18       ( 278) 1728 290.7 7.9e-79


>>CCDS11928.1 HAUS1 gene_id:115106|Hs108|chr18            (278 aa)
 initn: 1728 init1: 1728 opt: 1728  Z-score: 1528.7  bits: 290.7 E(32554): 7.9e-79
Smith-Waterman score: 1728; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KB6 MEPQEERETQVAAWLKKIFGDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIEDLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEPQEERETQVAAWLKKIFGDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIEDLKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLTSDLFRTKSKSEEIKIELEKLEKNLTATLVLEKCLQEDVKKAELHLSTERAKVDNRRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPLKKKLES
              190       200       210       220       230       240

              250       260       270        
pF1KB6 YLDLMPNPSLAQVKIEEAKRELDSIEAELTRRVDMMEL
       ::::::::::::::::::::::::::::::::::::::
CCDS11 YLDLMPNPSLAQVKIEEAKRELDSIEAELTRRVDMMEL
              250       260       270        




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:33:59 2016 done: Sat Nov  5 00:33:59 2016
 Total Scan time:  2.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]