FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6302, 277 aa
  1>>>pF1KB6302 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7012+/-0.000343; mu= 17.5898+/- 0.021
 mean_var=54.5077+/-11.052, 0's: 0 Z-trim(112.8): 10  B-trim: 0 in 0/52
 Lambda= 0.173718
 statistics sampled from 21854 (21858) to 21854 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.256), width:  16
 Scan time:  6.960

The best scores are:                                      opt bits E(85289)
NP_002346 (OMIM: 154540) cation-dependent mannose- ( 277) 1880 479.2 3.8e-135
XP_005253433 (OMIM: 154540) PREDICTED: cation-depe ( 277) 1880 479.2 3.8e-135
NP_001193953 (OMIM: 154540) cation-dependent manno ( 191) 1027 265.3 6.3e-71


>>NP_002346 (OMIM: 154540) cation-dependent mannose-6-ph  (277 aa)
 initn: 1880 init1: 1880 opt: 1880  Z-score: 2547.4  bits: 479.2 E(85289): 3.8e-135
Smith-Waterman score: 1880; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KB6 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
              190       200       210       220       230       240

              250       260       270       
pF1KB6 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
       :::::::::::::::::::::::::::::::::::::
NP_002 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
              250       260       270       

>>XP_005253433 (OMIM: 154540) PREDICTED: cation-dependen  (277 aa)
 initn: 1880 init1: 1880 opt: 1880  Z-score: 2547.4  bits: 479.2 E(85289): 3.8e-135
Smith-Waterman score: 1880; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KB6 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
              190       200       210       220       230       240

              250       260       270       
pF1KB6 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
       :::::::::::::::::::::::::::::::::::::
XP_005 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
              250       260       270       

>>NP_001193953 (OMIM: 154540) cation-dependent mannose-6  (191 aa)
 initn: 1027 init1: 1027 opt: 1027  Z-score: 1394.4  bits: 265.3 E(85289): 6.3e-71
Smith-Waterman score: 1125; 69.0% identity (69.0% similar) in 277 aa overlap (1-277:1-191)

               10        20        30        40        50        60
pF1KB6 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
       ::::::::::::::::::::::::::::::::                            
NP_001 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLAD----------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KB6 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
                                                                 ::
NP_001 ----------------------------------------------------------GC
                                                                   

              250       260       270       
pF1KB6 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
       :::::::::::::::::::::::::::::::::::::
NP_001 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
          160       170       180       190 




277 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:02:31 2016 done: Sat Nov  5 11:02:32 2016
 Total Scan time:  6.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]