FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6302, 277 aa
  1>>>pF1KB6302 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1344+/-0.000785; mu= 15.1779+/- 0.047
 mean_var=55.9381+/-11.261, 0's: 0 Z-trim(106.2): 9  B-trim: 0 in 0/49
 Lambda= 0.171483
 statistics sampled from 8855 (8858) to 8855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS8598.1 M6PR gene_id:4074|Hs108|chr12           ( 277) 1880 473.1 9.3e-134
CCDS73440.1 M6PR gene_id:4074|Hs108|chr12          ( 191) 1027 262.1 2.2e-70


>>CCDS8598.1 M6PR gene_id:4074|Hs108|chr12                (277 aa)
 initn: 1880 init1: 1880 opt: 1880  Z-score: 2514.9  bits: 473.1 E(32554): 9.3e-134
Smith-Waterman score: 1880; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KB6 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
              190       200       210       220       230       240

              250       260       270       
pF1KB6 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
       :::::::::::::::::::::::::::::::::::::
CCDS85 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
              250       260       270       

>>CCDS73440.1 M6PR gene_id:4074|Hs108|chr12               (191 aa)
 initn: 1027 init1: 1027 opt: 1027  Z-score: 1376.9  bits: 262.1 E(32554): 2.2e-70
Smith-Waterman score: 1125; 69.0% identity (69.0% similar) in 277 aa overlap (1-277:1-191)

               10        20        30        40        50        60
pF1KB6 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFPFYSCWRTGLLLLLLAVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS
       ::::::::::::::::::::::::::::::::                            
CCDS73 IYKGGDEYDNHCGKEQRRAVVMISCNRHTLAD----------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KB6 PEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGC
                                                                 ::
CCDS73 ----------------------------------------------------------GC
                                                                   

              250       260       270       
pF1KB6 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
       :::::::::::::::::::::::::::::::::::::
CCDS73 DFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM
          160       170       180       190 




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:02:30 2016 done: Sat Nov  5 11:02:30 2016
 Total Scan time:  2.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]