FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6301, 250 aa
  1>>>pF1KB6301 250 - 250 aa - 250 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8540+/-0.00121; mu= 1.6574+/- 0.074
 mean_var=549.3941+/-113.524, 0's: 0 Z-trim(116.0): 47  B-trim: 148 in 1/52
 Lambda= 0.054718
 statistics sampled from 16588 (16629) to 16588 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.511), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14        ( 250) 1780 153.8   1e-37


>>CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14             (250 aa)
 initn: 1780 init1: 1780 opt: 1780  Z-score: 790.7  bits: 153.8 E(32554): 1e-37
Smith-Waterman score: 1780; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KB6 MADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 WGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDI
              190       200       210       220       230       240

              250
pF1KB6 DLTSASYTMI
       ::::::::::
CCDS41 DLTSASYTMI
              250




250 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:38:59 2016 done: Fri Nov  4 19:39:00 2016
 Total Scan time:  2.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]