Result of FASTA (ccds) for
pF1KB6285
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6285, 862 aa
1>>>pF1KB6285 862 - 862 aa - 862 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9966+/-0.00113; mu= -0.7925+/- 0.068
mean_var=209.8332+/-43.165, 0's: 0 Z-trim(109.7): 54 B-trim: 338 in 2/51
Lambda= 0.088540
statistics sampled from 11046 (11091) to 11046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.341), width: 16
Scan time: 4.810
The best scores are: opt bits E(32554)
CCDS42421.1 TAF4B gene_id:6875|Hs108|chr18 ( 862) 5409 704.3 2.4e-202
CCDS77170.1 TAF4B gene_id:6875|Hs108|chr18 ( 867) 5389 701.7 1.4e-201
CCDS33500.1 TAF4 gene_id:6874|Hs108|chr20 (1085) 1210 168.0 8.4e-41
>>CCDS42421.1 TAF4B gene_id:6875|Hs108|chr18 (862 aa)
initn: 5409 init1: 5409 opt: 5409 Z-score: 3746.3 bits: 704.3 E(32554): 2.4e-202
Smith-Waterman score: 5409; 100.0% identity (100.0% similar) in 862 aa overlap (1-862:1-862)
10 20 30 40 50 60
pF1KB6 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 KQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 RIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGAL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB6 QKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB6 DTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB6 IQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDL
790 800 810 820 830 840
850 860
pF1KB6 IFCMEQEREMKYSRALYLALLK
::::::::::::::::::::::
CCDS42 IFCMEQEREMKYSRALYLALLK
850 860
>>CCDS77170.1 TAF4B gene_id:6875|Hs108|chr18 (867 aa)
initn: 5395 init1: 3306 opt: 5389 Z-score: 3732.5 bits: 701.7 E(32554): 1.4e-201
Smith-Waterman score: 5389; 99.4% identity (99.4% similar) in 867 aa overlap (1-862:1-867)
10 20 30 40 50 60
pF1KB6 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
430 440 450 460 470 480
490 500 510 520 530
pF1KB6 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQL-----VVQQP
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS77 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLFSLFQVVQQP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB6 SGGNEKQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SGGNEKQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQAS
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB6 PTQKNRIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PTQKNRIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFL
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB6 FIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASEN
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB6 YILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQ
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB6 LELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRI
790 800 810 820 830 840
840 850 860
pF1KB6 CLRDLIFCMEQEREMKYSRALYLALLK
:::::::::::::::::::::::::::
CCDS77 CLRDLIFCMEQEREMKYSRALYLALLK
850 860
>>CCDS33500.1 TAF4 gene_id:6874|Hs108|chr20 (1085 aa)
initn: 1595 init1: 895 opt: 1210 Z-score: 846.0 bits: 168.0 E(32554): 8.4e-41
Smith-Waterman score: 1624; 40.5% identity (61.8% similar) in 878 aa overlap (2-862:356-1085)
10 20 30
pF1KB6 MPAGLTEPAGAAPPAAVSASGTVTMAPAGAL
::. : .:. ::...:: .. . :::
CCDS33 SGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQT--LAASGPASTAASMVIGPTMQGAL
330 340 350 360 370 380
40 50 60 70 80 90
pF1KB6 PVRVESTPVALGAVTKAPVSVCVEPTASQPLRSPVGTLVTKVAPVSAPPKVSSGPRLPAP
: . : : :. : : .. : : :.:..: :. .. : : . :::: :
CCDS33 PSPAAVPPPAPGTPTGLPKGAAGAVTQSLS-RTPTAT--TSGIRATLTPTVLA-PRLPQP
390 400 410 420 430
100 110 120 130 140
pF1KB6 QIVAVKAPNTTTIQFPANLQLPPGTVLIKSNSGPLMLVSPQQTVTR------AETTSNIT
: :.:: :.::::: ::..:..: :... :::.... :. ....
CCDS33 P------QNPTNIQ---NFQLPPGMVLVRSENGQLLMI-PQQALAQMQAQAHAQPQTTMA
440 450 460 470 480
150 160 170 180 190 200
pF1KB6 SRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKKLAQIGTTVVTTVPKPSSVQSVAVPT
:::.:.. :.: :: .. .: . ::: ::.. : :..:... :.
CCDS33 PRPATPTSAPPVQISTVQAPGTPIIAR-QVTP--------TTIIKQV---SQAQTTVQPS
490 500 510 520 530
210 220 230 240 250 260
pF1KB6 SVVTVTPG-KP-LNTVTTLKPSSLG-ASSTPSNEPNLKAENSAAVQINLSPTMLENVKKC
... .:: .: : . . .::: :... .. :. . ...... . :: ::::::
CCDS33 ATLQRSPGVQPQLVLGGAAQTASLGTATAVQTGTPQRTVPGATTTSSAATETM-ENVKKC
540 550 560 570 580 590
270 280 290 300 310 320
pF1KB6 KNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEFTRKLYVELKSSPQPHLVPF
::::. ::::: ::.:: : . :::.::..:::.:::::.:: .:: ::.:::::.::::
CCDS33 KNFLSTLIKLASSGKQSTETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPF
600 610 620 630 640 650
330 340 350 360 370 380
pF1KB6 LKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTTVTTSPVVTTTVSSSQSEKSIIV
::.:. ::::: :.: .:::: :: :: :. :. :....:. . .. . :
CCDS33 LKRSLPALRQLTPDSAAFIQQSQQQPPPPTSQAT---TALTAVVLSSSVQRTAGKTAATV
660 670 680 690 700 710
390 400 410 420 430 440
pF1KB6 SGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAATGGTTAGTGLLQTSKPLVTSVA
..: : ..: :. : : .:.: ::: .
CCDS33 TSALQPPVLS------LTQP---------------------TQVGVGKQGQPTPLVIQ--
720 730 740
450 460 470 480 490 500
pF1KB6 NTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAICLPSVKPVVSSAGTTSDKPVIGT
:: :: :: : :.: : .. :...
CCDS33 --------QPPKP--------------------GALIRPPQV--------TLTQTPMVA-
750 760
510 520 530 540 550 560
pF1KB6 PVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNEKQVTTISHSSTLTIQKCGQKTM
: :: . . :: .:.. : ::
CCDS33 -----LRQPHNRIMLTT--PQQIQLNPL---QP---------------------------
770 780 790
570 580 590 600 610
pF1KB6 PVNTIIPTSQFPPASILKQITLPGNKILSL---QASPTQKNRIKENVTSCFRDEDDINDV
.: ..: .:::.: :: ::. .:::..:: . :::.::::::
CCDS33 -----VP--------VVKPAVLPGTKALSAVSAQAAAAQKNKLKEPGGGSFRDDDDINDV
800 810 820 830
620 630 640 650 660 670
pF1KB6 TSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGALQKRILDIGKKHDITELNSD
.:::::::.::.: :::::::::::: .::::: ::. . ::.:::.::::: ::::. :
CCDS33 ASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLQAPLQRRILEIGKKHGITELHPD
840 850 860 870 880 890
680 690 700 710 720 730
pF1KB6 AVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQR
.:. .:.:::.::..:.::.. ::.. .:: .. : ::.:.::::.:.:::.::::
CCDS33 VVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQR
900 910 920 930 940 950
740 750 760 770 780 790
pF1KB6 KDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKK
:: .:::.:..:::::: .::::::::::::::.:: ::::...::::::::::::::::
CCDS33 KDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK
960 970 980 990 1000 1010
800 810 820 830 840 850
pF1KB6 RPLE-----SGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDLIFCMEQEREMKYSR
: .. :: :: . .. :.:.. . .:. : ::::. :::::::.:.::: ..:
CCDS33 RKVDCPGPGSGAEGSGPGSVVPGSSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSL
1020 1030 1040 1050 1060 1070
860
pF1KB6 ALYLALLK
:: :.::
CCDS33 LLYKAFLK
1080
862 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:32:48 2016 done: Sat Nov 5 14:32:49 2016
Total Scan time: 4.810 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]