Result of FASTA (ccds) for
pF1KB6256
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6256, 683 aa
1>>>pF1KB6256 683 - 683 aa - 683 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.4177+/-0.00131; mu= -23.1043+/- 0.080
mean_var=686.1378+/-141.474, 0's: 0 Z-trim(116.5): 53 B-trim: 554 in 2/53
Lambda= 0.048963
statistics sampled from 17054 (17104) to 17054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.525), width: 16
Scan time: 4.950
The best scores are: opt bits E(32554)
CCDS34620.2 POU6F2 gene_id:11281|Hs108|chr7 ( 691) 4479 331.5 2.5e-90
CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 ( 655) 3392 254.7 3.1e-67
>>CCDS34620.2 POU6F2 gene_id:11281|Hs108|chr7 (691 aa)
initn: 4479 init1: 4479 opt: 4479 Z-score: 1735.3 bits: 331.5 E(32554): 2.5e-90
Smith-Waterman score: 4479; 100.0% identity (100.0% similar) in 683 aa overlap (1-683:9-691)
10 20 30 40 50
pF1KB6 MIAGQVSKPLLSVRSEMNAELRGEDKAATSDSELNEPLLAPVESNDSEDTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSALLQDPMIAGQVSKPLLSVRSEMNAELRGEDKAATSDSELNEPLLAPVESNDSEDTPS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQLASAVAGVMPGGPPALNQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQLASAVAGVMPGGPPALNQP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 ILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 QLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 QLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 LASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB6 SGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB6 GQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB6 LEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB6 NTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFI
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB6 GSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQ
610 620 630 640 650 660
660 670 680
pF1KB6 ALKNTIKRLKQHEPATAVPLEPLTDSLEENS
:::::::::::::::::::::::::::::::
CCDS34 ALKNTIKRLKQHEPATAVPLEPLTDSLEENS
670 680 690
>>CCDS55103.1 POU6F2 gene_id:11281|Hs108|chr7 (655 aa)
initn: 3387 init1: 3387 opt: 3392 Z-score: 1320.6 bits: 254.7 E(32554): 3.1e-67
Smith-Waterman score: 4165; 94.7% identity (94.7% similar) in 683 aa overlap (1-683:9-655)
10 20 30 40 50
pF1KB6 MIAGQVSKPLLSVRSEMNAELRGEDKAATSDSELNEPLLAPVESNDSEDTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSALLQDPMIAGQVSKPLLSVRSEMNAELRGEDKAATSDSELNEPLLAPVESNDSEDTPS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQLASAVAGVMPGGPPALNQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLFGARGNPALSDPGTPDQHQASQTHPPFPVGPQPLLTAQQLASAVAGVMPGGPPALNQP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 ILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQNLQATSSLNSQLQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 QLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 QLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB6 LASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB6 SGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQGITLSPIKPGQQLHQPSQTSV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB6 GQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSSSSSALSVGQLVSNPQTAAGEVDGVN
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB6 LEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFLPQEAQE
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICR----------------
490 500 510 520
540 550 560 570 580 590
pF1KB6 NTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFI
::::::::::::::::::::::::::::::::::::::::
CCDS55 --------------------FEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQNLTEFI
530 540 550 560
600 610 620 630 640 650
pF1KB6 GSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQ
570 580 590 600 610 620
660 670 680
pF1KB6 ALKNTIKRLKQHEPATAVPLEPLTDSLEENS
:::::::::::::::::::::::::::::::
CCDS55 ALKNTIKRLKQHEPATAVPLEPLTDSLEENS
630 640 650
683 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:22:23 2016 done: Sat Nov 5 08:22:24 2016
Total Scan time: 4.950 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]