FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6238, 677 aa
  1>>>pF1KB6238 677 - 677 aa - 677 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7355+/-0.00106; mu= -6.7122+/- 0.064
 mean_var=436.3251+/-90.019, 0's: 0 Z-trim(115.6): 24  B-trim: 0 in 0/54
 Lambda= 0.061400
 statistics sampled from 16156 (16174) to 16156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.497), width:  16
 Scan time:  4.700

The best scores are:                                      opt bits E(32554)
CCDS5686.1 TAF6 gene_id:6878|Hs108|chr7            ( 677) 4488 412.0 1.4e-114
CCDS55135.1 TAF6 gene_id:6878|Hs108|chr7           ( 714) 4488 412.0 1.4e-114


>>CCDS5686.1 TAF6 gene_id:6878|Hs108|chr7                 (677 aa)
 initn: 4488 init1: 4488 opt: 4488  Z-score: 2170.6  bits: 412.0 E(32554): 1.4e-114
Smith-Waterman score: 4488; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:1-677)

               10        20        30        40        50        60
pF1KB6 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KGQGATTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 VHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 KSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 DHVQSLLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DHVQSLLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 TLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 MSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 GSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGT
              610       620       630       640       650       660

              670       
pF1KB6 PKANGSQPNSGSPQPAP
       :::::::::::::::::
CCDS56 PKANGSQPNSGSPQPAP
              670       

>>CCDS55135.1 TAF6 gene_id:6878|Hs108|chr7                (714 aa)
 initn: 4488 init1: 4488 opt: 4488  Z-score: 2170.3  bits: 412.0 E(32554): 1.4e-114
Smith-Waterman score: 4488; 100.0% identity (100.0% similar) in 677 aa overlap (1-677:38-714)

                                             10        20        30
pF1KB6                               MAEEKKLKLSNTVLPSESMKVVAESMGIAQ
                                     ::::::::::::::::::::::::::::::
CCDS55 TITACLQLREGSPSLHRGLHPSREEKRDSRMAEEKKLKLSNTVLPSESMKVVAESMGIAQ
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KB6 IQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDIDYALKLKNVEPLYGFHAQE
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KB6 FIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEGCQPAIPENPP
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KB6 PAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKP
       190       200       210       220       230       240       

              220       230       240       250       260       270
pF1KB6 RSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVN
       250       260       270       280       290       300       

              280       290       300       310       320       330
pF1KB6 VVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALR
       310       320       330       340       350       360       

              340       350       360       370       380       390
pF1KB6 DFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKT
       370       380       390       400       410       420       

              400       410       420       430       440       450
pF1KB6 LILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLRPPPDNQDAYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSLLLKHCAPVLAKLRPPPDNQDAYRA
       430       440       450       460       470       480       

              460       470       480       490       500       510
pF1KB6 EFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVP
       490       500       510       520       530       540       

              520       530       540       550       560       570
pF1KB6 GSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSP
       550       560       570       580       590       600       

              580       590       600       610       620       630
pF1KB6 VTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPP
       610       620       630       640       650       660       

              640       650       660       670       
pF1KB6 PASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP
       670       680       690       700       710    




677 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:23:19 2016 done: Sat Nov  5 14:23:20 2016
 Total Scan time:  4.700 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]