Result of FASTA (ccds) for
pF1KB6140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6140, 634 aa
1>>>pF1KB6140 634 - 634 aa - 634 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2838+/-0.000878; mu= 2.2791+/- 0.053
mean_var=195.6327+/-39.383, 0's: 0 Z-trim(113.7): 14 B-trim: 6 in 1/49
Lambda= 0.091697
statistics sampled from 14342 (14350) to 14342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.441), width: 16
Scan time: 3.720
The best scores are: opt bits E(32554)
CCDS77270.1 GATAD2A gene_id:54815|Hs108|chr19 ( 634) 4085 552.8 5.1e-157
CCDS12402.2 GATAD2A gene_id:54815|Hs108|chr19 ( 633) 4068 550.6 2.4e-156
CCDS1054.1 GATAD2B gene_id:57459|Hs108|chr1 ( 593) 810 119.5 1.3e-26
>>CCDS77270.1 GATAD2A gene_id:54815|Hs108|chr19 (634 aa)
initn: 4085 init1: 4085 opt: 4085 Z-score: 2932.5 bits: 552.8 E(32554): 5.1e-157
Smith-Waterman score: 4085; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)
10 20 30 40 50 60
pF1KB6 MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LRATEATAMAMGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRATEATAMAMGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TTVALKETSTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TTVALKETSTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GSVGSTVTTPPPLVRGTQNIPAGKPSLQTSSARMPGSVIPPPLVRGGQQASSKLGPQASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GSVGSTVTTPPPLVRGTQNIPAGKPSLQTSSARMPGSVIPPPLVRGGQQASSKLGPQASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKLALRKQLEKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKLALRKQLEKTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRMSAATVLSREPYMCAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRMSAATVLSREPYMCAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 CKTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CKTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 GTAPAQAKAEPTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GTAPAQAKAEPTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 GVLHTFSPSPKLQNSASATALVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GVLHTFSPSPKLQNSASATALVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSP
550 560 570 580 590 600
610 620 630
pF1KB6 SLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
::::::::::::::::::::::::::::::::::
CCDS77 SLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
610 620 630
>>CCDS12402.2 GATAD2A gene_id:54815|Hs108|chr19 (633 aa)
initn: 2561 init1: 2561 opt: 4068 Z-score: 2920.4 bits: 550.6 E(32554): 2.4e-156
Smith-Waterman score: 4068; 99.8% identity (99.8% similar) in 634 aa overlap (1-634:1-633)
10 20 30 40 50 60
pF1KB6 MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LRATEATAMAMGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRATEATAMAMGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TTVALKETSTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTVALKETSTEALMKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GSVGSTVTTPPPLVRGTQNIPAGKPSLQTSSARMPGSVIPPPLVRGGQQASSKLGPQASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSVGSTVTTPPPLVRGTQNIPAGKPSLQTSSARMPGSVIPPPLVRGGQQASSKLGPQASS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQIQGQRIIQQGLIRVANVPNT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKLALRKQLEKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKLALRKQLEKTL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRMSAATVLSREPYMCAQ
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS12 LEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQ-GRMSAATVLSREPYMCAQ
370 380 390 400 410
430 440 450 460 470 480
pF1KB6 CKTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CKTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQ
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB6 GTAPAQAKAEPTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GTAPAQAKAEPTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPR
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB6 GVLHTFSPSPKLQNSASATALVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GVLHTFSPSPKLQNSASATALVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSP
540 550 560 570 580 590
610 620 630
pF1KB6 SLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
::::::::::::::::::::::::::::::::::
CCDS12 SLAVHKSSSAVDRQREYLLDMIPPRSIPQSATWK
600 610 620 630
>>CCDS1054.1 GATAD2B gene_id:57459|Hs108|chr1 (593 aa)
initn: 1129 init1: 381 opt: 810 Z-score: 591.5 bits: 119.5 E(32554): 1.3e-26
Smith-Waterman score: 1264; 41.3% identity (62.3% similar) in 666 aa overlap (1-632:4-590)
10 20 30 40
pF1KB6 MTEEACRTRSQKRALERDPTEDDVESKKIKMERG-------LLASDLNTD-GDMRV-
:::.: : ::.:. .::: .:..::: .:: : ....:
CCDS10 MDRMTEDALRLNLLKRSLDPADERDDVLAKRLKMEGHEAMERLKMLALLKRKDLANLEVP
10 20 30 40 50 60
50 60 70 80 90
pF1KB6 ----TPEPGAG------PTQGLLRATEATAMAMGR-GEGLVGDGPVDMRTSHSDMKSERR
: . :.: .: :: .. . :: :. ..: :::: . .:. . :
CCDS10 HELPTKQDGSGVKGYEEKLNGNLRP-HGDNRTAGRPGKENINDEPVDMSARRSEPERGRL
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 PPSPDVIVLSDNEQPSSPRVNGLTTVALKETSTEALMKSSPEERERMIKQLKEELRLEEA
::::.::::::: :::: .. :: .. : . .. :::...::::..:::::::
CCDS10 TPSPDIIVLSDNEA-SSPRSSSRMEERLKAANLEMFKGKGIEERQQLIKQLRDELRLEEA
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 KLVLLKKLRQSQIQKEATAQKPTGSVGSTVTTPPPLVRGTQNIPAGKPSLQTSSARMPGS
.:::::::::::.::: ..:: :.: :: .:
CCDS10 RLVLLKKLRQSQLQKENVVQKT------------PVV---QNA---------------AS
180 190 200
220 230 240 250 260 270
pF1KB6 VIPPPLVRGGQQASSKLGPQASSQVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVP
.. : .. :::. ::: . ..: : : .: : ::. ..: : .:.. :. .:
CCDS10 IVQPSPAHVGQQGLSKLPSRPGAQGVEPQNLRTLQGHSVIRSATNTTLPHMLMSQRVIAP
210 220 230 240 250 260
280 290 300 310 320
pF1KB6 S-VQIQGQR-IIQQGLIRVANVPNTSLLVNI-PQPTPASLKGTTATSA-----QANSTPT
. .:.:::: . ::.:... :: . .: :: . . :..:: .. :
CCDS10 NPAQLQGQRGPPKPGLVRTTT-PNMNPAINYQPQSSSSVPCQRTTSSAIYMNLASHIQPG
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB6 SVASVVTSAESP------ASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNE
.: : . :: :. ::::::::::::::::::::::::::: ..:::::::.:
CCDS10 TVNRVSSPLPSPSAMTDAANSQAAAKLALRKQLEKTLLEIPPPKPPAPLLHFLPSAANSE
330 340 350 360 370 380
390 400 410 420 430 440
pF1KB6 FIYLVGLEEVVQNLLETQAGRMSAATVLSREPYMCAQCKTDFTCRWREEKSGAIMCENCM
:::.::::::::.....: :. : :..: ::..::::.:::: .:..::.: :.::.::
CCDS10 FIYMVGLEEVVQSVIDSQ-GK-SCASLLRVEPFVCAQCRTDFTPHWKQEKNGKILCEQCM
390 400 410 420 430 440
450 460 470 480 490 500
pF1KB6 TTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQGTAPAQAKAEPTAAPHPVLKQVI
:.:::::::.:::.::: :::::::::::::::: :: : ::.:: ....:
CCDS10 TSNQKKALKAEHTNRLKNAFVKALQQEQEIEQRLQQQ------AALSPTTAP--AVSSVS
450 460 470 480 490
510 520 530 540 550 560
pF1KB6 KPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSPSPKLQNSASATALVS
: .. .: :. . : .:.:.:: :. :..: .:. .:.:. .. ..
CCDS10 K--QETIMRHHTLRQ-----APQPQSSLQRGIPTSARSMLSNFAQAPQLSVPGGLLGM--
500 510 520 530 540
570 580 590 600 610 620
pF1KB6 RTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIP
: : ..:... ... ::. : .::::::::::::
CCDS10 ------------------------P---GVNIAYLNTGIGGHKGPSLADRQREYLLDMIP
550 560 570 580
630
pF1KB6 PRSIPQSATWK
:::: :: .
CCDS10 PRSISQSISGQK
590
634 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:57:25 2016 done: Fri Nov 4 21:57:26 2016
Total Scan time: 3.720 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]