FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6129, 587 aa
  1>>>pF1KB6129 587 - 587 aa - 587 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8551+/-0.000919; mu= 15.8977+/- 0.055
 mean_var=74.5932+/-14.885, 0's: 0 Z-trim(105.8): 15  B-trim: 30 in 1/51
 Lambda= 0.148499
 statistics sampled from 8622 (8626) to 8622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.265), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS13219.1 CDK5RAP1 gene_id:51654|Hs108|chr20     ( 587) 3869 838.6       0
CCDS63255.1 CDK5RAP1 gene_id:51654|Hs108|chr20     ( 510) 1938 424.9 1.2e-118


>>CCDS13219.1 CDK5RAP1 gene_id:51654|Hs108|chr20          (587 aa)
 initn: 3869 init1: 3869 opt: 3869  Z-score: 4478.4  bits: 838.6 E(32554):    0
Smith-Waterman score: 3869; 100.0% identity (100.0% similar) in 587 aa overlap (1-587:1-587)

               10        20        30        40        50        60
pF1KB6 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
              490       500       510       520       530       540

              550       560       570       580       
pF1KB6 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
              550       560       570       580       

>>CCDS63255.1 CDK5RAP1 gene_id:51654|Hs108|chr20          (510 aa)
 initn: 1938 init1: 1938 opt: 1938  Z-score: 2243.6  bits: 424.9 E(32554): 1.2e-118
Smith-Waterman score: 3192; 86.9% identity (86.9% similar) in 587 aa overlap (1-587:1-510)

               10        20        30        40        50        60
pF1KB6 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSPERQEDGARKDFSSRLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKVYLETYGCQMNVNDTEIAW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLHQLKALKTRRPRSRVPLRIGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADVMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS63 VQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQ--------
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KB6 GQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTS
                                                                   
CCDS63 ------------------------------------------------------------
                                                                   

              370       380       390       400       410       420
pF1KB6 PHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ---------VLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP
                     300       310       320       330       340   

              430       440       450       460       470       480
pF1KB6 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEV
           350       360       370       380       390       400   

              490       500       510       520       530       540
pF1KB6 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEM
           410       420       430       440       450       460   

              550       560       570       580       
pF1KB6 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSAYC
           470       480       490       500       510




587 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:47:41 2016 done: Fri Nov  4 21:47:42 2016
 Total Scan time:  3.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]