FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5996, 613 aa
  1>>>pF1KB5996 613 - 613 aa - 613 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6107+/-0.000765; mu= 10.5384+/- 0.047
 mean_var=148.0770+/-29.136, 0's: 0 Z-trim(113.3): 4  B-trim: 0 in 0/54
 Lambda= 0.105398
 statistics sampled from 13984 (13985) to 13984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.43), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS13791.1 CCDC116 gene_id:164592|Hs108|chr22     ( 613) 4147 642.1 6.2e-184


>>CCDS13791.1 CCDC116 gene_id:164592|Hs108|chr22          (613 aa)
 initn: 4147 init1: 4147 opt: 4147  Z-score: 3415.7  bits: 642.1 E(32554): 6.2e-184
Smith-Waterman score: 4147; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KB5 MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 WFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 KVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQAT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 EPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFK
              550       560       570       580       590       600

              610   
pF1KB5 DEDQDEDKDEDGV
       :::::::::::::
CCDS13 DEDQDEDKDEDGV
              610   




613 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:45:56 2016 done: Fri Nov  4 21:45:56 2016
 Total Scan time:  4.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]