FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5985, 521 aa
  1>>>pF1KB5985 521 - 521 aa - 521 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9131+/-0.000748; mu= 16.3144+/- 0.045
 mean_var=86.3392+/-17.020, 0's: 0 Z-trim(110.5): 12  B-trim: 3 in 1/51
 Lambda= 0.138029
 statistics sampled from 11682 (11688) to 11682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.359), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS12783.1 PNKP gene_id:11284|Hs108|chr19         ( 521) 3540 714.7 6.4e-206


>>CCDS12783.1 PNKP gene_id:11284|Hs108|chr19              (521 aa)
 initn: 3540 init1: 3540 opt: 3540  Z-score: 3810.4  bits: 714.7 E(32554): 6.4e-206
Smith-Waterman score: 3540; 100.0% identity (100.0% similar) in 521 aa overlap (1-521:1-521)

               10        20        30        40        50        60
pF1KB5 MGEVEAPGRLWLESPPGGAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGEVEAPGRLWLESPPGGAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGLHPLTLRWEETRTPESQPDTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGLHPLTLRWEETRTPESQPDTPP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GTPLVSQDEKRDAELPKKRMRKSNPGWENLEKLLVFTAAGVKPQGKVAGFDLDGTLITTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GTPLVSQDEKRDAELPKKRMRKSNPGWENLEKLLVFTAAGVKPQGKVAGFDLDGTLITTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGKVFPTGPSDWRILYPEIPRKLRELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 EKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EKLGVPFQVLVATHAGLYRKPVTGMWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAGFELPAFDPRTVSRSGPLCLPESRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKKKDFSCADRLFALNLGLPFATPEEFFLKWPAAGFELPAFDPRTVSRSGPLCLPESRAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LSASPEVVVAVGFPGAGKSTFLKKHLVSAGYVHVNRDTLGSWQRCVTTCETALKQGKRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSASPEVVVAVGFPGAGKSTFLKKHLVSAGYVHVNRDTLGSWQRCVTTCETALKQGKRVA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 IDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMVMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHNNRFREMTDSSHIPVSDMVMY
              430       440       450       460       470       480

              490       500       510       520 
pF1KB5 GYRKQFEAPTLAEGFSAILEIPFRLWVEPRLGRLYCQFSEG
       :::::::::::::::::::::::::::::::::::::::::
CCDS12 GYRKQFEAPTLAEGFSAILEIPFRLWVEPRLGRLYCQFSEG
              490       500       510       520 




521 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:43:17 2016 done: Fri Nov  4 21:43:18 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]