FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5971, 518 aa
  1>>>pF1KB5971 518 - 518 aa - 518 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5012+/-0.000839; mu= 12.8883+/- 0.051
 mean_var=98.5592+/-19.291, 0's: 0 Z-trim(110.1): 25  B-trim: 180 in 1/49
 Lambda= 0.129189
 statistics sampled from 11377 (11389) to 11377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.35), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS14365.1 APEX2 gene_id:27301|Hs108|chrX         ( 518) 3553 672.6 2.9e-193


>>CCDS14365.1 APEX2 gene_id:27301|Hs108|chrX              (518 aa)
 initn: 3553 init1: 3553 opt: 3553  Z-score: 3583.2  bits: 672.6 E(32554): 2.9e-193
Smith-Waterman score: 3553; 100.0% identity (100.0% similar) in 518 aa overlap (1-518:1-518)

               10        20        30        40        50        60
pF1KB5 MLRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LMTPKTPEEKAVAKVVKGQAKTSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LMTPKTPEEKAVAKVVKGQAKTSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRT
              430       440       450       460       470       480

              490       500       510        
pF1KB5 VKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWSRPS
       ::::::::::::::::::::::::::::::::::::::
CCDS14 VKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWSRPS
              490       500       510        




518 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:41:23 2016 done: Fri Nov  4 21:41:23 2016
 Total Scan time:  3.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]