Result of FASTA (ccds) for
pF1KB5924
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5924, 520 aa
1>>>pF1KB5924 520 - 520 aa - 520 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9969+/-0.000941; mu= 14.1488+/- 0.056
mean_var=64.3924+/-12.828, 0's: 0 Z-trim(104.2): 20 B-trim: 5 in 1/49
Lambda= 0.159829
statistics sampled from 7767 (7772) to 7767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.239), width: 16
Scan time: 3.350
The best scores are: opt bits E(32554)
CCDS9109.2 RIC8B gene_id:55188|Hs108|chr12 ( 520) 3369 785.9 0
CCDS81733.1 RIC8B gene_id:55188|Hs108|chr12 ( 536) 3145 734.2 8.6e-212
CCDS81734.1 RIC8B gene_id:55188|Hs108|chr12 ( 560) 3145 734.2 9e-212
CCDS65982.1 RIC8A gene_id:60626|Hs108|chr11 ( 531) 671 163.8 4.5e-40
CCDS7690.1 RIC8A gene_id:60626|Hs108|chr11 ( 537) 650 158.9 1.3e-38
>>CCDS9109.2 RIC8B gene_id:55188|Hs108|chr12 (520 aa)
initn: 3369 init1: 3369 opt: 3369 Z-score: 4195.2 bits: 785.9 E(32554): 0
Smith-Waterman score: 3369; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KB5 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
430 440 450 460 470 480
490 500 510 520
pF1KB5 AKPKEELLKPMGLKPDGTITPLEEALNQYSVIEETSSDTD
::::::::::::::::::::::::::::::::::::::::
CCDS91 AKPKEELLKPMGLKPDGTITPLEEALNQYSVIEETSSDTD
490 500 510 520
>>CCDS81733.1 RIC8B gene_id:55188|Hs108|chr12 (536 aa)
initn: 3165 init1: 3139 opt: 3145 Z-score: 3915.8 bits: 734.2 E(32554): 8.6e-212
Smith-Waterman score: 3145; 94.9% identity (97.1% similar) in 514 aa overlap (1-513:1-514)
10 20 30 40 50 60
pF1KB5 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
430 440 450 460 470 480
490 500 510 520
pF1KB5 AKPKEELLKPMGLKP-DGTITPLEEALNQYSVIEETSSDTD
:::. .:. .: . : . : ..: ...
CCDS81 AKPNINLITGHLEEPMPNPIDEMTEEQKEYEAMKLVNMLDKLSRRADVKDLHQDGG
490 500 510 520 530
>>CCDS81734.1 RIC8B gene_id:55188|Hs108|chr12 (560 aa)
initn: 3381 init1: 3139 opt: 3145 Z-score: 3915.5 bits: 734.2 E(32554): 9e-212
Smith-Waterman score: 3228; 92.6% identity (92.8% similar) in 552 aa overlap (1-512:1-552)
10 20 30 40 50 60
pF1KB5 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAIEALKALFNVTVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVLICPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 THEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKN
430 440 450 460 470 480
490 500
pF1KB5 AKP----------------------------------------KEELLKPMGLKPDGTIT
::: .::::::::::::::::
CCDS81 AKPNINLITGHLEEPMPNPIDEMTEEQKEYEAMKLVNMLDKLSREELLKPMGLKPDGTIT
490 500 510 520 530 540
510 520
pF1KB5 PLEEALNQYSVIEETSSDTD
::::::::::::
CCDS81 PLEEALNQYSVIEETSSDTD
550 560
>>CCDS65982.1 RIC8A gene_id:60626|Hs108|chr11 (531 aa)
initn: 1338 init1: 671 opt: 671 Z-score: 832.8 bits: 163.8 E(32554): 4.5e-40
Smith-Waterman score: 1316; 47.3% identity (73.3% similar) in 484 aa overlap (3-482:2-450)
10 20 30 40 50
pF1KB5 MDEERALY-IVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIP
: ::. :..:: .: ..::.:...: .: :...... ::.: : . .:: . .:
CCDS65 MEPRAVAEAVETGEEDVIMEALRSYNQEHSQSFTFDDAQQEDRKRLAELLVSVLEQGLP
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TTCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLK
. .: :. .::::::.. : : :.....: : : .. . :. . ... :..::::
CCDS65 PSHRVIWLQSVRILSRDRNCLDPFTSRQSLQALACYADISVSEGSVPESADMDVVLESLK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 CLCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIR
::::.:..: .::.:. : :..:: . . ..:.: .:.. :::::::::. :.::.:
CCDS65 CLCNLVLSSPVAQMLAAEARLVVKLTERVGLYRERSFPHDVQFFDLRLLFLLTALRTDVR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 SQLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPP--LSPQETDCAIEALKALFNV
.:: ::.:. :::. :: .... : : : :: : :::. :.: ::.:::.
CCDS65 QQLFQELKGVRLLTDTLELTLGV--TPE------GNPPPTLLPSQETERAMEILKVLFNI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 TVDSWKVH-KESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVL
:.:: : . : :. .: ....::::..:. . :.:::.:..:::::.:.:..:::::
CCDS65 TLDSIKGEVDEEDAALYRHLGTLLRHCVMIA-TAGDRTEEFHGHAVNLLGNLPLKCLDVL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 ICPLTHEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKG
. ::. : . ..: . :.::..:..:: :.:::. :
CCDS65 L-------------TLE--PHGDSTE-----------FMGVNMDVIRALLIFLEKRLHKT
300 310 320
360 370 380 390 400 410
pF1KB5 SSYREGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHV
.:...::::.::::.: :: ::::: ::::::::: .::::: .::::::::::.
CCDS65 HRLKESVAPVLSVLTECARMHRPARKFLKAQVLPPLRDVRTRPEVGEMLRNKLVRLMTHL
330 340 350 360 370 380
420 430 440 450 460 470
pF1KB5 DLGVKQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTE
: ::..:::::::::.: : ..:::::::::::::::::.:::: .. :::::::::.
CCDS65 DTDVKRVAAEFLFVLCSESVPRFIKYTGYGNAAGLLAARGLMAGGRPEGQYSEDEDTDTD
390 400 410 420 430 440
480 490 500 510 520
pF1KB5 EYKNAKPKEELLKPMGLKPDGTITPLEEALNQYSVIEETSSDTD
:::.::
CCDS65 EYKEAKASINPVTGRVEEKPPNPMEGMTEEQKEHEAMKLVTMFDKLSRNRVIQPMGMSPR
450 460 470 480 490 500
>>CCDS7690.1 RIC8A gene_id:60626|Hs108|chr11 (537 aa)
initn: 1128 init1: 484 opt: 650 Z-score: 806.6 bits: 158.9 E(32554): 1.3e-38
Smith-Waterman score: 1295; 46.7% identity (72.4% similar) in 490 aa overlap (3-482:2-456)
10 20 30 40 50
pF1KB5 MDEERALY-IVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIP
: ::. :..:: .: ..::.:...: .: :...... ::.: : . .:: . .:
CCDS76 MEPRAVAEAVETGEEDVIMEALRSYNQEHSQSFTFDDAQQEDRKRLAELLVSVLEQGLP
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TTCQVSCLEVLRILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLK
. .: :. .::::::.. : : :.....: : : .. . :. . ... :..::::
CCDS76 PSHRVIWLQSVRILSRDRNCLDPFTSRQSLQALACYADISVSEGSVPESADMDVVLESLK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 CLCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIR
::::.:..: .::.:. : :..:: . . ..:.: .:.. :::::::::. :.::.:
CCDS76 CLCNLVLSSPVAQMLAAEARLVVKLTERVGLYRERSFPHDVQFFDLRLLFLLTALRTDVR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 SQLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPP--LSPQETDCAIEALKALFNV
.:: ::.:. :::. :: .... : : : :: : :::. :.: ::.:::.
CCDS76 QQLFQELKGVRLLTDTLELTLGV--TPE------GNPPPTLLPSQETERAMEILKVLFNI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 TVDSWKVH-KESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSNAVNLLSNVPVSCLDVL
:.:: : . : :. .: ....::::..:. . :.:::.:..:::::.:.:..:::::
CCDS76 TLDSIKGEVDEEDAALYRHLGTLLRHCVMIA-TAGDRTEEFHGHAVNLLGNLPLKCLDVL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 ICPLTHEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKG
. ::. : . ..: . :.::..:..:: :.:::. :
CCDS76 L-------------TLE--PHGDSTE-----------FMGVNMDVIRALLIFLEKRLHKT
300 310 320
360 370 380 390 400 410
pF1KB5 SSYREGLTPVLSLLTECSRAHRNIRKFLK------DQVLPPLRDVTNRPEVGSTVRNKLV
.:...::::.::::.: :: ::::: ::::::::: .::::: .:::::
CCDS76 HRLKESVAPVLSVLTECARMHRPARKFLKAQGWPPPQVLPPLRDVRTRPEVGEMLRNKLV
330 340 350 360 370 380
420 430 440 450 460 470
pF1KB5 RLMTHVDLGVKQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSED
:::::.: ::..:::::::::.: : ..:::::::::::::::::.:::: .. ::::
CCDS76 RLMTHLDTDVKRVAAEFLFVLCSESVPRFIKYTGYGNAAGLLAARGLMAGGRPEGQYSED
390 400 410 420 430 440
480 490 500 510 520
pF1KB5 EDTDTEEYKNAKPKEELLKPMGLKPDGTITPLEEALNQYSVIEETSSDTD
:::::.:::.::
CCDS76 EDTDTDEYKEAKASINPVTGRVEEKPPNPMEGMTEEQKEHEAMKLVTMFDKLSRNRVIQP
450 460 470 480 490 500
520 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:48:23 2016 done: Mon Nov 7 04:48:23 2016
Total Scan time: 3.350 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]