FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5883, 467 aa
  1>>>pF1KB5883 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0965+/-0.000652; mu= 21.2038+/- 0.040
 mean_var=98.1604+/-18.838, 0's: 0 Z-trim(114.4): 9  B-trim: 52 in 1/50
 Lambda= 0.129451
 statistics sampled from 14956 (14961) to 14956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.46), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS7794.1 C11orf16 gene_id:56673|Hs108|chr11      ( 467) 3324 630.7  1e-180


>>CCDS7794.1 C11orf16 gene_id:56673|Hs108|chr11           (467 aa)
 initn: 3324 init1: 3324 opt: 3324  Z-score: 3358.0  bits: 630.7 E(32554): 1e-180
Smith-Waterman score: 3324; 99.4% identity (99.8% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KB5 MESSTGPRMPLLKYCSVATSLKAPGWDGAAPPWDLSFTYPFALQAPWLTGHKPLARHASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MESSTGPRMPLLKYCSVATSLKAPGWDGAAPPWDLSFTYPFALQAPWLTGHKPLARHASS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPCLHVADPAWQGPGWLGRAGDAANTWVLARREADGFYYRAQIKATPELERQGVLLVEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CPCLHVADPAWQGPGWLGRAGDAANTWVLARREADGFYYRAQIKATPELERQGVLLVEFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 APLVAGPKLPAQQQRVVLEEDVIPLSPSVGYSLRPGDKVLALWEPGQQQYGPGTVLLGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 APLVAGPKLPAQQQRVVLEEDVIPLSPSVGYSLRPGDKVLALWEPGQQQYGPGTVLLGLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MRDPQRASKEKEITVHFWNGKAAKVPLGGVQSVSLTIWKKAVERLHKSFTREHPRPLHWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MRDPQRASKEKEITVHFWNGKAAKVPLGGVQSVSLTIWKKAVERLHKSFTREHPRPLHWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PCCSLLGPITGRITNELPPDAPFLCPLCHHHACCQLLCQGCLCGCPPCGTTWWPLTRTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PCCSLLGPITGRITNELPPDAPFLCPLCHHHACCQLLCQGCLCGCPPCGTTWWPLTRTSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VMARELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGVENDLEMGPPQRLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VMARELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGVENDLEMGPPQRLM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 VNSAVNTDPIFLEMPLRQSGLCQPEWRYWKRNGPEPCPGKPGTRYSNICKEEKDHKQQRA
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS77 VNSAVNTDPIFLEMPLRQSGLCQPEWRYWKRNGPEPCLGKPGTRYSNICKEEKDHKQQRA
              370       380       390       400       410       420

              430       440       450       460       
pF1KB5 QTVVVGTTKELVSKATHMKPPQTPPGEAEHRKRSQSLAICQWNKNSR
       ::.::::::::::::::::::.:::::::::::::::::::::::::
CCDS77 QTAVVGTTKELVSKATHMKPPRTPPGEAEHRKRSQSLAICQWNKNSR
              430       440       450       460       




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:27:08 2016 done: Sat Nov  5 15:27:09 2016
 Total Scan time:  3.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]