Result of FASTA (ccds) for
pF1KB5837
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5837, 240 aa
1>>>pF1KB5837 240 - 240 aa - 240 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3167+/-0.000904; mu= 0.8183+/- 0.055
mean_var=380.5956+/-77.594, 0's: 0 Z-trim(118.3): 6 B-trim: 182 in 1/53
Lambda= 0.065742
statistics sampled from 19157 (19163) to 19157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.589), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS2770.1 SHISA5 gene_id:51246|Hs108|chr3 ( 240) 1744 177.9 5.2e-45
CCDS63623.1 SHISA5 gene_id:51246|Hs108|chr3 ( 233) 1669 170.8 7.1e-43
CCDS63622.1 SHISA5 gene_id:51246|Hs108|chr3 ( 209) 1533 157.8 5.1e-39
CCDS63621.1 SHISA5 gene_id:51246|Hs108|chr3 ( 137) 996 106.6 8.4e-24
>>CCDS2770.1 SHISA5 gene_id:51246|Hs108|chr3 (240 aa)
initn: 1744 init1: 1744 opt: 1744 Z-score: 921.5 bits: 177.9 E(32554): 5.2e-45
Smith-Waterman score: 1744; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB5 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
190 200 210 220 230 240
>>CCDS63623.1 SHISA5 gene_id:51246|Hs108|chr3 (233 aa)
initn: 1183 init1: 1183 opt: 1669 Z-score: 883.2 bits: 170.8 E(32554): 7.1e-43
Smith-Waterman score: 1669; 97.1% identity (97.1% similar) in 240 aa overlap (1-240:1-233)
10 20 30 40 50 60
pF1KB5 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
:::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS63 VLKKFVWSEE-------SVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
180 190 200 210 220 230
>>CCDS63622.1 SHISA5 gene_id:51246|Hs108|chr3 (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 814.0 bits: 157.8 E(32554): 5.1e-39
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
CCDS63 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>CCDS63621.1 SHISA5 gene_id:51246|Hs108|chr3 (137 aa)
initn: 996 init1: 996 opt: 996 Z-score: 540.8 bits: 106.6 E(32554): 8.4e-24
Smith-Waterman score: 996; 100.0% identity (100.0% similar) in 136 aa overlap (105-240:2-137)
80 90 100 110 120 130
pF1KB5 PEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTCSCCC
::::::::::::::::::::::::::::::
CCDS63 MGFGATLAVGLTIFVLSVVTIIICFTCSCCC
10 20 30
140 150 160 170 180 190
pF1KB5 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
40 50 60 70 80 90
200 210 220 230 240
pF1KB5 YPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
100 110 120 130
240 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:28:13 2016 done: Sat Nov 5 10:28:14 2016
Total Scan time: 2.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]