FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5836, 481 aa
  1>>>pF1KB5836 481 - 481 aa - 481 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6473+/-0.000823; mu= 16.4902+/- 0.049
 mean_var=76.5765+/-15.022, 0's: 0 Z-trim(107.4): 14  B-trim: 0 in 0/52
 Lambda= 0.146564
 statistics sampled from 9580 (9586) to 9580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.294), width:  16
 Scan time:  3.180

The best scores are:                                      opt bits E(32554)
CCDS765.1 TRMT13 gene_id:54482|Hs108|chr1          ( 481) 3246 695.9 2.4e-200


>>CCDS765.1 TRMT13 gene_id:54482|Hs108|chr1               (481 aa)
 initn: 3246 init1: 3246 opt: 3246  Z-score: 3710.2  bits: 695.9 E(32554): 2.4e-200
Smith-Waterman score: 3246; 99.8% identity (99.8% similar) in 481 aa overlap (1-481:1-481)

               10        20        30        40        50        60
pF1KB5 MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAMEEEDARKRILCP
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS76 MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEEDARKRILCP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 NDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 FHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETT
              430       440       450       460       470       480

        
pF1KB5 A
       :
CCDS76 A
        




481 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:27:32 2016 done: Sat Nov  5 10:27:33 2016
 Total Scan time:  3.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]