Result of FASTA (omim) for
pF1KB5829
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5829, 124 aa
1>>>pF1KB5829 124 - 124 aa - 124 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7761+/-0.000255; mu= 14.1590+/- 0.016
mean_var=65.2240+/-13.348, 0's: 0 Z-trim(120.7): 11 B-trim: 102 in 1/52
Lambda= 0.158807
statistics sampled from 36192 (36203) to 36192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.424), width: 16
Scan time: 5.300
The best scores are: opt bits E(85289)
XP_016873605 (OMIM: 605426) PREDICTED: p53-regulat ( 124) 817 194.6 3.3e-50
NP_071395 (OMIM: 605426) p53-regulated apoptosis-i ( 124) 817 194.6 3.3e-50
XP_016873602 (OMIM: 605426) PREDICTED: p53-regulat ( 146) 817 194.7 3.8e-50
NP_001182123 (OMIM: 605426) p53-regulated apoptosi ( 120) 773 184.5 3.5e-47
XP_016873603 (OMIM: 605426) PREDICTED: p53-regulat ( 142) 773 184.6 4e-47
NP_001182124 (OMIM: 605426) p53-regulated apoptosi ( 86) 573 138.6 1.7e-33
XP_016873606 (OMIM: 605426) PREDICTED: p53-regulat ( 108) 573 138.7 2e-33
NP_001238893 (OMIM: 605426) p53-regulated apoptosi ( 108) 337 84.6 3.8e-17
XP_016873604 (OMIM: 605426) PREDICTED: p53-regulat ( 130) 332 83.5 9.8e-17
>>XP_016873605 (OMIM: 605426) PREDICTED: p53-regulated a (124 aa)
initn: 817 init1: 817 opt: 817 Z-score: 1022.3 bits: 194.6 E(85289): 3.3e-50
Smith-Waterman score: 817; 98.4% identity (98.4% similar) in 124 aa overlap (1-124:1-124)
10 20 30 40 50 60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
XP_016 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLRDRPLGSAFELSYDQKKAP
70 80 90 100 110 120
pF1KB5 LRLQ
::::
XP_016 LRLQ
>>NP_071395 (OMIM: 605426) p53-regulated apoptosis-induc (124 aa)
initn: 817 init1: 817 opt: 817 Z-score: 1022.3 bits: 194.6 E(85289): 3.3e-50
Smith-Waterman score: 817; 98.4% identity (98.4% similar) in 124 aa overlap (1-124:1-124)
10 20 30 40 50 60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
NP_071 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLRDRPLGSAFELSYDQKKAP
70 80 90 100 110 120
pF1KB5 LRLQ
::::
NP_071 LRLQ
>>XP_016873602 (OMIM: 605426) PREDICTED: p53-regulated a (146 aa)
initn: 817 init1: 817 opt: 817 Z-score: 1021.3 bits: 194.7 E(85289): 3.8e-50
Smith-Waterman score: 817; 98.4% identity (98.4% similar) in 124 aa overlap (1-124:23-146)
10 20 30
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
::::::::::::::::::::::::::::::::::::::
XP_016 MCRRRPFPRTLRLLGGRQGLPWMGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGA
70 80 90 100 110 120
100 110 120
pF1KB5 TVLGDRSLGSAFELSYDQKKAPLRLQ
::: :: :::::::::::::::::::
XP_016 TVLRDRPLGSAFELSYDQKKAPLRLQ
130 140
>>NP_001182123 (OMIM: 605426) p53-regulated apoptosis-in (120 aa)
initn: 586 init1: 586 opt: 773 Z-score: 968.0 bits: 184.5 E(85289): 3.5e-47
Smith-Waterman score: 773; 95.2% identity (95.2% similar) in 124 aa overlap (1-124:1-120)
10 20 30 40 50 60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
::::::::::::::::::::::::: :::::::::::: :: :::::::::::::::
NP_001 GCRGIEALSVSSGSWSSATVWILTG----LSRPFLPGATVLRDRPLGSAFELSYDQKKAP
70 80 90 100 110
pF1KB5 LRLQ
::::
NP_001 LRLQ
120
>>XP_016873603 (OMIM: 605426) PREDICTED: p53-regulated a (142 aa)
initn: 586 init1: 586 opt: 773 Z-score: 967.0 bits: 184.6 E(85289): 4e-47
Smith-Waterman score: 773; 95.2% identity (95.2% similar) in 124 aa overlap (1-124:23-142)
10 20 30
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
::::::::::::::::::::::::::::::::::::::
XP_016 MCRRRPFPRTLRLLGGRQGLPWMGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGA
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
XP_016 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTG----LSRPFLPGA
70 80 90 100 110
100 110 120
pF1KB5 TVLGDRSLGSAFELSYDQKKAPLRLQ
::: :: :::::::::::::::::::
XP_016 TVLRDRPLGSAFELSYDQKKAPLRLQ
120 130 140
>>NP_001182124 (OMIM: 605426) p53-regulated apoptosis-in (86 aa)
initn: 573 init1: 573 opt: 573 Z-score: 722.3 bits: 138.6 E(85289): 1.7e-33
Smith-Waterman score: 573; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)
10 20 30 40 50 60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
::::::::::::::::::::::::
NP_001 GCRGIEALSVSSGSWSSATVWILTVQ
70 80
>>XP_016873606 (OMIM: 605426) PREDICTED: p53-regulated a (108 aa)
initn: 573 init1: 573 opt: 573 Z-score: 721.0 bits: 138.7 E(85289): 2e-33
Smith-Waterman score: 573; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:23-106)
10 20 30
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
::::::::::::::::::::::::::::::::::::::
XP_016 MCRRRPFPRTLRLLGGRQGLPWMGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGA
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTVQ
70 80 90 100
100 110 120
pF1KB5 TVLGDRSLGSAFELSYDQKKAPLRLQ
>>NP_001238893 (OMIM: 605426) p53-regulated apoptosis-in (108 aa)
initn: 346 init1: 337 opt: 337 Z-score: 428.7 bits: 84.6 E(85289): 3.8e-17
Smith-Waterman score: 337; 100.0% identity (100.0% similar) in 49 aa overlap (1-49:1-49)
10 20 30 40 50 60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSPCSENRDGLLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
NP_001 ATAPGRLCSHRGADIPSFQTHQDPVTASGSSELHADCPQFRALDRAGN
70 80 90 100
>>XP_016873604 (OMIM: 605426) PREDICTED: p53-regulated a (130 aa)
initn: 338 init1: 328 opt: 332 Z-score: 421.5 bits: 83.5 E(85289): 9.8e-17
Smith-Waterman score: 332; 87.9% identity (91.4% similar) in 58 aa overlap (1-58:23-76)
10 20 30
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
::::::::::::::::::::::::::::::::::::::
XP_016 MCRRRPFPRTLRLLGGRQGLPWMGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 RAQTHTPGWVSDPLVLGAQVHGGCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGA
:::::::::.. ::: :
XP_016 RAQTHTPGWMG----LGAPVTYSKKSFPVANNEDDALGSLWALRRGSLLFLLSQFGFHGN
70 80 90 100 110
124 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:04:08 2016 done: Sat Nov 5 15:04:09 2016
Total Scan time: 5.300 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]