FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5706, 717 aa
  1>>>pF1KB5706 717 - 717 aa - 717 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4208+/-0.000428; mu= 10.4102+/- 0.027
 mean_var=137.5047+/-27.745, 0's: 0 Z-trim(115.0): 22  B-trim: 208 in 1/53
 Lambda= 0.109374
 statistics sampled from 25223 (25237) to 25223 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.296), width:  16
 Scan time: 10.390

The best scores are:                                      opt bits E(85289)
NP_001317 (OMIM: 600367) cleavage stimulation fact ( 717) 4774 765.5       0
NP_001028677 (OMIM: 600367) cleavage stimulation f ( 103)  502 90.9 2.7e-18
NP_001028678 (OMIM: 600367) cleavage stimulation f (  44)  278 55.3   6e-08


>>NP_001317 (OMIM: 600367) cleavage stimulation factor s  (717 aa)
 initn: 4774 init1: 4774 opt: 4774  Z-score: 4080.2  bits: 765.5 E(85289):    0
Smith-Waterman score: 4774; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)

               10        20        30        40        50        60
pF1KB5 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
              610       620       630       640       650       660

              670       680       690       700       710       
pF1KB5 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
              670       680       690       700       710       

>>NP_001028677 (OMIM: 600367) cleavage stimulation facto  (103 aa)
 initn: 498 init1: 498 opt: 502  Z-score: 449.4  bits: 90.9 E(85289): 2.7e-18
Smith-Waterman score: 502; 86.8% identity (89.0% similar) in 91 aa overlap (1-91:1-88)

               10        20        30        40        50        60
pF1KB5 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
       :::::::::::::::.    :     :.: :                             
NP_001 FPSSGRFWKLYIEAEVTILFY---FFLYQYCSIHCSDRKQVRNIAN              
               70        80           90       100                 

              130       140       150       160       170       180
pF1KB5 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM

>>NP_001028678 (OMIM: 600367) cleavage stimulation facto  (44 aa)
 initn: 278 init1: 278 opt: 278  Z-score: 263.7  bits: 55.3 E(85289): 6e-08
Smith-Waterman score: 278; 100.0% identity (100.0% similar) in 43 aa overlap (1-43:1-43)

               10        20        30        40        50        60
pF1KB5 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
       :::::::::::::::::::::::::::::::::::::::::::                 
NP_001 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQV                
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB5 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE




717 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:04:42 2016 done: Sat Nov  5 15:04:43 2016
 Total Scan time: 10.390 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]