FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5706, 717 aa
  1>>>pF1KB5706 717 - 717 aa - 717 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5613+/-0.00101; mu= 9.6928+/- 0.061
 mean_var=129.3470+/-25.708, 0's: 0 Z-trim(107.7): 19  B-trim: 0 in 0/53
 Lambda= 0.112771
 statistics sampled from 9740 (9755) to 9740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.3), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS7883.1 CSTF3 gene_id:1479|Hs108|chr11          ( 717) 4774 788.6       0
CCDS44563.1 CSTF3 gene_id:1479|Hs108|chr11         ( 103)  502 93.1 2.2e-19


>>CCDS7883.1 CSTF3 gene_id:1479|Hs108|chr11               (717 aa)
 initn: 4774 init1: 4774 opt: 4774  Z-score: 4204.8  bits: 788.6 E(32554):    0
Smith-Waterman score: 4774; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)

               10        20        30        40        50        60
pF1KB5 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
              610       620       630       640       650       660

              670       680       690       700       710       
pF1KB5 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
              670       680       690       700       710       

>>CCDS44563.1 CSTF3 gene_id:1479|Hs108|chr11              (103 aa)
 initn: 498 init1: 498 opt: 502  Z-score: 461.5  bits: 93.1 E(32554): 2.2e-19
Smith-Waterman score: 502; 86.8% identity (89.0% similar) in 91 aa overlap (1-91:1-88)

               10        20        30        40        50        60
pF1KB5 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
       :::::::::::::::.    :     :.: :                             
CCDS44 FPSSGRFWKLYIEAEVTILFY---FFLYQYCSIHCSDRKQVRNIAN              
               70        80           90       100                 

              130       140       150       160       170       180
pF1KB5 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM




717 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:04:41 2016 done: Sat Nov  5 15:04:41 2016
 Total Scan time:  3.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]