FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5700, 426 aa
  1>>>pF1KB5700 426 - 426 aa - 426 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6225+/-0.000859; mu= 11.8989+/- 0.052
 mean_var=112.1814+/-22.046, 0's: 0 Z-trim(108.8): 24  B-trim: 6 in 1/53
 Lambda= 0.121092
 statistics sampled from 10455 (10474) to 10455 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.322), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS42791.1 ZC3H15 gene_id:55854|Hs108|chr2        ( 426) 2811 501.9 4.7e-142


>>CCDS42791.1 ZC3H15 gene_id:55854|Hs108|chr2             (426 aa)
 initn: 2811 init1: 2811 opt: 2811  Z-score: 2663.7  bits: 501.9 E(32554): 4.7e-142
Smith-Waterman score: 2811; 100.0% identity (100.0% similar) in 426 aa overlap (1-426:1-426)

               10        20        30        40        50        60
pF1KB5 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 FSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIERER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LVNDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYIPRDVDETGITVASLERFSTYTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVNDDDEEADDTRYTQGTGGDEVDDSVSVNDIDLSLYIPRDVDETGITVASLERFSTYTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 DKDENKLSEASGGRAENGERSDLEEDNEREGTENGAIDAVPVDENLFTGEDLDELEEELN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DKDENKLSEASGGRAENGERSDLEEDNEREGTENGAIDAVPVDENLFTGEDLDELEEELN
              370       380       390       400       410       420

             
pF1KB5 TLDLEE
       ::::::
CCDS42 TLDLEE
             




426 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:11:04 2016 done: Sat Nov  5 21:11:05 2016
 Total Scan time:  3.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]