FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5656, 347 aa
  1>>>pF1KB5656 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3587+/-0.00104; mu= 3.5217+/- 0.062
 mean_var=209.2783+/-42.591, 0's: 0 Z-trim(110.8): 36  B-trim: 12 in 1/50
 Lambda= 0.088657
 statistics sampled from 11882 (11907) to 11882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15       ( 347) 2262 301.8 5.6e-82
CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19       ( 317)  984 138.3 8.5e-33


>>CCDS10295.1 HMG20A gene_id:10363|Hs108|chr15            (347 aa)
 initn: 2262 init1: 2262 opt: 2262  Z-score: 1585.2  bits: 301.8 E(32554): 5.6e-82
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
              250       260       270       280       290       300

              310       320       330       340       
pF1KB5 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
              310       320       330       340       

>>CCDS45919.1 HMG20B gene_id:10362|Hs108|chr19            (317 aa)
 initn: 932 init1: 858 opt: 984  Z-score: 702.3  bits: 138.3 E(32554): 8.5e-33
Smith-Waterman score: 984; 48.4% identity (77.8% similar) in 320 aa overlap (31-345:1-312)

               10        20        30         40        50         
pF1KB5 MENLMTSSTLPPLFADEDGSKESNDLATTGLNH-PEVPYSSGATSSTNNPE----FVEDL
                                     ..: :. : ...: .. . :     ::  .
CCDS45                               MSHGPKQPGAAAAPAGGKAPGQHGGFVVTV
                                             10        20        30

          60        70        80        90       100       110     
pF1KB5 SQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMN
       .: .   .:.  :  :..  ::.:  .::: : ::.:::: :   :.::.:.::::::.:
CCDS45 KQER---GEGPRA--GEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLN
                  40          50         60          70        80  

         120       130       140       150       160       170     
pF1KB5 ERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEA
       :::::.:...:..::::::.::: ::::: : :::::::::.:.:..:::::. ::..::
CCDS45 ERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEA
             90       100       110       120       130       140  

         180       190       200       210       220       230     
pF1KB5 YKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAE
       ::. ..: :...  :   ...  ..  . .:  .    :.::.::::::::...::::::
CCDS45 YKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAE
            150       160       170       180       190       200  

         240       250       260       270       280       290     
pF1KB5 LRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSS
       ::.::: :. :::.::.::.:..:: .: :.:: ..  :. :. .:::.:...::.::.:
CCDS45 LRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTAS
            210       220       230       240       250       260  

         300       310       320       330       340          
pF1KB5 FASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR   
       :::.:.::.:::::. :.: :: :::. :  .: ..:..:. ..:.. ..     
CCDS45 FASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL
            270       280       290       300       310       




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:01:30 2016 done: Fri Nov  4 04:01:31 2016
 Total Scan time:  2.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]