FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5642, 350 aa
  1>>>pF1KB5642 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8286+/-0.000767; mu= 6.4332+/- 0.046
 mean_var=161.2996+/-32.696, 0's: 0 Z-trim(114.2): 22  B-trim: 84 in 1/52
 Lambda= 0.100985
 statistics sampled from 14732 (14752) to 14732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.453), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS957.1 MCL1 gene_id:4170|Hs108|chr1             ( 350) 2292 345.2 4.9e-95
CCDS956.1 MCL1 gene_id:4170|Hs108|chr1             ( 271) 1507 230.7 1.1e-60
CCDS72909.1 MCL1 gene_id:4170|Hs108|chr1           ( 197) 1052 164.4 7.5e-41


>>CCDS957.1 MCL1 gene_id:4170|Hs108|chr1                  (350 aa)
 initn: 2292 init1: 2292 opt: 2292  Z-score: 1819.7  bits: 345.2 E(32554): 4.9e-95
Smith-Waterman score: 2292; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB5 MFGLKRNAVIGLNLYCGGAGLGAGSGGATRPGGRLLATEKEASARREIGGGEAGAVIGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MFGLKRNAVIGLNLYCGGAGLGAGSGGATRPGGRLLATEKEASARREIGGGEAGAVIGGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AGASPPSTLTPDSRRVARPPPIGAEVPDVTATPARLLFFAPTRRAAPLEEMEAPAADAIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 AGASPPSTLTPDSRRVARPPPIGAEVPDVTATPARLLFFAPTRRAAPLEEMEAPAADAIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SPEEELDGYEPEPLGKRPAVLPLLELVGESGNNTSTDGSLPSTPPPAEEEEDELYRQSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SPEEELDGYEPEPLGKRPAVLPLLELVGESGNNTSTDGSLPSTPPPAEEEEDELYRQSLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 IISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVR
              250       260       270       280       290       300

              310       320       330       340       350
pF1KB5 TKRDWLVKQRGWDGFVEFFHVEDLEGGIRNVLLAFAGVAGVGAGLAYLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 TKRDWLVKQRGWDGFVEFFHVEDLEGGIRNVLLAFAGVAGVGAGLAYLIR
              310       320       330       340       350

>>CCDS956.1 MCL1 gene_id:4170|Hs108|chr1                  (271 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 1203.2  bits: 230.7 E(32554): 1.1e-60
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KB5 MFGLKRNAVIGLNLYCGGAGLGAGSGGATRPGGRLLATEKEASARREIGGGEAGAVIGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MFGLKRNAVIGLNLYCGGAGLGAGSGGATRPGGRLLATEKEASARREIGGGEAGAVIGGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AGASPPSTLTPDSRRVARPPPIGAEVPDVTATPARLLFFAPTRRAAPLEEMEAPAADAIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 AGASPPSTLTPDSRRVARPPPIGAEVPDVTATPARLLFFAPTRRAAPLEEMEAPAADAIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SPEEELDGYEPEPLGKRPAVLPLLELVGESGNNTSTDGSLPSTPPPAEEEEDELYRQSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 SPEEELDGYEPEPLGKRPAVLPLLELVGESGNNTSTDGSLPSTPPPAEEEEDELYRQSLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS95 IISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGWVCGVLPCRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVR
                                                                   
CCDS95 PRRWHQECAAGFCRCCWSRSWFGISNKIALL                             
              250       260       270                              

>>CCDS72909.1 MCL1 gene_id:4170|Hs108|chr1                (197 aa)
 initn: 1050 init1: 1050 opt: 1052  Z-score: 846.9  bits: 164.4 E(32554): 7.5e-41
Smith-Waterman score: 1052; 98.8% identity (98.8% similar) in 164 aa overlap (187-350:34-197)

        160       170       180       190       200       210      
pF1KB5 DGSLPSTPPPAEEEEDELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRV
                                     :  :::::::::::::::::::::::::::
CCDS72 LKRNAVIGLNLYCGGAGLGAGSGGATRPGGRLLATGAKDTKPMGRSGATSRKALETLRRV
            10        20        30        40        50        60   

        220       230       240       250       260       270      
pF1KB5 GDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK
            70        80        90       100       110       120   

        280       290       300       310       320       330      
pF1KB5 HLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGGIRNVLLAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGGIRNVLLAFA
           130       140       150       160       170       180   

        340       350
pF1KB5 GVAGVGAGLAYLIR
       ::::::::::::::
CCDS72 GVAGVGAGLAYLIR
           190       




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:50:19 2016 done: Thu Nov  3 17:50:20 2016
 Total Scan time:  3.100 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]