Result of FASTA (ccds) for
pF1KB5603
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5603, 466 aa
1>>>pF1KB5603 466 - 466 aa - 466 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0195+/-0.00092; mu= 9.1517+/- 0.056
mean_var=97.7978+/-19.226, 0's: 0 Z-trim(108.0): 20 B-trim: 50 in 1/48
Lambda= 0.129691
statistics sampled from 9900 (9913) to 9900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.305), width: 16
Scan time: 3.150
The best scores are: opt bits E(32554)
CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 ( 466) 3051 581.4 7e-166
CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 ( 265) 538 111.1 1.5e-24
CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 ( 276) 516 107.0 2.6e-23
CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 260) 513 106.4 3.7e-23
CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 ( 271) 509 105.7 6.4e-23
CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 261) 508 105.5 7.1e-23
CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 ( 244) 406 86.4 3.7e-17
>>CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 (466 aa)
initn: 3051 init1: 3051 opt: 3051 Z-score: 3091.6 bits: 581.4 E(32554): 7e-166
Smith-Waterman score: 3051; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)
10 20 30 40 50 60
pF1KB5 MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PKEERENPSKRSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PKEERENPSKRSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KQNGKLEDNPSSGSPPRTTLLGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KQNGKLEDNPSSGSPPRTTLLGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 MEQVDEITTSTTTSTNGAAYSNQAVQVRPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEQVDEITTSTTTSTNGAAYSNQAVQVRPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 CSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 NILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPI
370 380 390 400 410 420
430 440 450 460
pF1KB5 ESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
430 440 450 460
>>CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 (265 aa)
initn: 564 init1: 291 opt: 538 Z-score: 554.4 bits: 111.1 E(32554): 1.5e-24
Smith-Waterman score: 538; 47.4% identity (73.4% similar) in 192 aa overlap (264-449:66-255)
240 250 260 270 280
pF1KB5 TPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQ--LNRKPA---LP-LKTRSTPE
.:::.::. :.. :: :: . . . .
CCDS33 KQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGK
40 50 60 70 80 90
290 300 310 320 330 340
pF1KB5 FSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIIL
.:.:::::::: :.. . .: . :: .. .:.:::: :: :::.::.:..: .:
CCDS33 KCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVL
100 110 120 130 140 150
350 360 370 380 390 400
pF1KB5 FTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSP
:::: ::: . ..:: . . : ::::: :: .:::.:::. :::.:::.::.::::
CCDS33 FTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSP
160 170 180 190 200 210
410 420 430 440 450 460
pF1KB5 QAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
.. .. :..:..::: : .:.::: ::::.: : . ..::
CCDS33 ASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR-EDDVYSMLHRLCNR
220 230 240 250 260
>>CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 (276 aa)
initn: 564 init1: 291 opt: 516 Z-score: 531.9 bits: 107.0 E(32554): 2.6e-23
Smith-Waterman score: 521; 43.8% identity (70.0% similar) in 203 aa overlap (264-449:66-266)
240 250 260 270 280
pF1KB5 TPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEE-----QLNRKPALPLKTRST---
.:::.:: . ... ..:. . .
CCDS33 KQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYL
40 50 60 70 80 90
290 300 310 320 330
pF1KB5 -PEFSL--------VLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFL
:: .. :.:::::::: :.. . .: . :: .. .:.:::: :: :::
CCDS33 LPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFL
100 110 120 130 140 150
340 350 360 370 380 390
pF1KB5 ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRD
.::.:..: .::::: ::: . ..:: . . : ::::: :: .:::.:::. :::.
CCDS33 QRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRE
160 170 180 190 200 210
400 410 420 430 440 450
pF1KB5 LSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDR
:::.::.:::: .. .. :..:..::: : .:.::: ::::.: : . ..::
CCDS33 LSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR-EDDVYSMLHRL
220 230 240 250 260 270
460
pF1KB5 FRLHDLLPPD
CCDS33 CNR
>>CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 (260 aa)
initn: 500 init1: 273 opt: 513 Z-score: 529.3 bits: 106.4 E(32554): 3.7e-23
Smith-Waterman score: 513; 43.4% identity (73.5% similar) in 196 aa overlap (265-454:61-254)
240 250 260 270 280
pF1KB5 PDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQ--LNRKPA---LP-LKTRSTPEF
: :.::. . . :. :: :.... ..
CCDS56 QKPRSRGILHSLFCCVCRDDGEALPAHSGAPLLVEENGAIPKTPVQYLLPEAKAQDSDKI
40 50 60 70 80 90
290 300 310 320 330 340
pF1KB5 SLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILF
.:.:::::::: :.. ...: . .:: .. :..:::: :: :::.::....: .::
CCDS56 CVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLF
100 110 120 130 140 150
350 360 370 380 390 400
pF1KB5 TASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQ
::: ::: . ..:: : : ::::: :: .:::.:::. ::::: ...:.::::
CCDS56 TASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPA
160 170 180 190 200
410 420 430 440 450 460
pF1KB5 AFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
..... .:..:. ::: . .:.:: :.::.:.: ... :: .:
CCDS56 SYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVD-DVYSVLRQPRPGS
210 220 230 240 250 260
>>CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 (271 aa)
initn: 497 init1: 283 opt: 509 Z-score: 525.0 bits: 105.7 E(32554): 6.4e-23
Smith-Waterman score: 509; 41.5% identity (69.1% similar) in 217 aa overlap (238-449:51-261)
210 220 230 240 250 260
pF1KB5 RPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYSSAHAE-ATYEEDWEVFDPYYFIKHVPP
: ::. .: :.:.:. ... ... .
CCDS41 QGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELAAYKEEANTIAKSDLLQCL--
30 40 50 60 70
270 280 290 300 310 320
pF1KB5 LTEEQLNRKPALPLKTRSTPE----FSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIY
. :. . :. : . : : . .:.:::::::: :.. ...: . :. .. . .
CCDS41 --QYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTH
80 90 100 110 120 130
330 340 350 360 370 380
pF1KB5 QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCV
:::: ::. :::.::....: .::::: ::: . ..:: . . : ::::: ::
CCDS41 QVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFH
140 150 160 170 180 190
390 400 410 420 430 440
pF1KB5 QGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKL
:: :.:::. ::::: ::.:.:::: .. .. :..:..::: : :.:::.:::..:.:
CCDS41 QGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEEL
200 210 220 230 240 250
450 460
pF1KB5 VELNEDVRPHIRDRFRLHDLLPPD
:::
CCDS41 -SGAEDVYTSLGQLRAP
260 270
>>CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 (261 aa)
initn: 500 init1: 273 opt: 508 Z-score: 524.2 bits: 105.5 E(32554): 7.1e-23
Smith-Waterman score: 508; 44.9% identity (75.3% similar) in 178 aa overlap (278-454:80-255)
250 260 270 280 290 300
pF1KB5 YEEDWEVFDPYYFIKHVPPLTEEQLNRKPALP-LKTRSTPEFSLVLDLDETLVHCSLNEL
:: :.... .. .:.:::::::: :.. .
CCDS24 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
50 60 70 80 90 100
310 320 330 340 350 360
pF1KB5 EDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPK
..: . .:: .. :..:::: :: :::.::....: .::::: ::: . ..:: :
CCDS24 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-K
110 120 130 140 150 160
370 380 390 400 410 420
pF1KB5 KQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMD
: ::::: :: .:::.:::. ::::: ...:.:::: ..... .:..:. ::: .
CCDS24 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN
170 180 190 200 210 220
430 440 450 460
pF1KB5 KNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
.:.:: :.::.:.: ... :: .:
CCDS24 MSDTELHDLLPFFEQLSRVD-DVYSVLRQPRPGS
230 240 250 260
>>CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 (244 aa)
initn: 426 init1: 354 opt: 406 Z-score: 421.5 bits: 86.4 E(32554): 3.7e-17
Smith-Waterman score: 424; 35.0% identity (62.4% similar) in 226 aa overlap (252-462:21-243)
230 240 250 260 270 280
pF1KB5 VNRDIPPLTAPVTPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLK
: : : . ... . . : : :::.
CCDS11 MMRTQCLLGLRTFVAFAAKLWSFF-IYLLRRQIRTVIQYQTVRYDILPLS
10 20 30 40
290 300 310 320
pF1KB5 TRSTPEFS------LVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQV---------YV
: ... :::::::::.: . . .. : : : .: .:
CCDS11 PVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVR-PGTPPDFILKVVIDKHPVRFFV
50 60 70 80 90 100
330 340 350 360 370 380
pF1KB5 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNY
. :: ::: .:: ::...:::: ..:.. . . :: .......: .:.::. :.:
CCDS11 HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSY
110 120 130 140 150 160
390 400 410 420 430 440
pF1KB5 IKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN
::::... :::. .:.:::: :. . .:.:::.::: : .:. ::.:.:.:. : ...
CCDS11 IKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDAL-RFT
170 180 190 200 210 220
450 460
pF1KB5 EDVRPHIRDRFRLHDLLPPD
::: . .. : :
CCDS11 ADVRSVLSRNLHQHRLW
230 240
466 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:43:00 2016 done: Thu Nov 3 22:43:00 2016
Total Scan time: 3.150 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]