FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5596, 661 aa
  1>>>pF1KB5596 661 - 661 aa - 661 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8046+/-0.00128; mu= -0.6465+/- 0.076
 mean_var=343.1988+/-74.669, 0's: 0 Z-trim(110.5): 61  B-trim: 0 in 0/53
 Lambda= 0.069231
 statistics sampled from 11627 (11663) to 11627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.358), width:  16
 Scan time:  4.020

The best scores are:                                      opt bits E(32554)
CCDS31037.2 WDR26 gene_id:80232|Hs108|chr1         ( 661) 4491 463.3 4.8e-130


>>CCDS31037.2 WDR26 gene_id:80232|Hs108|chr1              (661 aa)
 initn: 4491 init1: 4491 opt: 4491  Z-score: 2448.2  bits: 463.3 E(32554): 4.8e-130
Smith-Waterman score: 4491; 100.0% identity (100.0% similar) in 661 aa overlap (1-661:1-661)

               10        20        30        40        50        60
pF1KB5 MQANGAGGGGGGGGGGGGGGGGGGGQGQTPELACLSAQNGESSPSSSSSAGDLAHANGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQANGAGGGGGGGGGGGGGGGGGGGQGQTPELACLSAQNGESSPSSSSSAGDLAHANGLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PSAPSAASNNSNSLNVNNGVPGGAAAASSATVAAASATTAASSSLATPELGSSLKKKKRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PSAPSAASNNSNSLNVNNGVPGGAAAASSATVAAASATTAASSSLATPELGSSLKKKKRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 TPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 CKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDNYLVACG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 DSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 ALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 RSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD
              610       620       630       640       650       660

        
pF1KB5 S
       :
CCDS31 S
        




661 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:41:18 2016 done: Thu Nov  3 22:41:18 2016
 Total Scan time:  4.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]