FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5574, 212 aa
  1>>>pF1KB5574 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2762+/-0.000788; mu= 13.4372+/- 0.047
 mean_var=59.4876+/-11.913, 0's: 0 Z-trim(107.4): 40  B-trim: 26 in 1/48
 Lambda= 0.166288
 statistics sampled from 9537 (9572) to 9537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS2550.1 BOK gene_id:666|Hs108|chr2              ( 212) 1399 343.7 5.1e-95


>>CCDS2550.1 BOK gene_id:666|Hs108|chr2                   (212 aa)
 initn: 1399 init1: 1399 opt: 1399  Z-score: 1819.3  bits: 343.7 E(32554): 5.1e-95
Smith-Waterman score: 1399; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB5 MEVLRRSSVFAAEIMDAFDRSPTDKELVAQAKALGREYVHARLLRAGLSWSAPERAAPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MEVLRRSSVFAAEIMDAFDRSPTDKELVAQAKALGREYVHARLLRAGLSWSAPERAAPVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GRLAEVCAVLLRLGDELEMIRPSVYRNVARQLHISLQSEPVVTDAFLAVAGHIFSAGITW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GRLAEVCAVLLRLGDELEMIRPSVYRNVARQLHISLQSEPVVTDAFLAVAGHIFSAGITW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GKVVSLYAVAAGLAVDCVRQAQPAMVHALVDCLGEFVRKTLATWLRRRGGWTDVLKCVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GKVVSLYAVAAGLAVDCVRQAQPAMVHALVDCLGEFVRKTLATWLRRRGGWTDVLKCVVS
              130       140       150       160       170       180

              190       200       210  
pF1KB5 TDPGLRSHWLVAALCSFGRFLKAAFFVLLPER
       ::::::::::::::::::::::::::::::::
CCDS25 TDPGLRSHWLVAALCSFGRFLKAAFFVLLPER
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:55:52 2016 done: Fri Nov  4 03:55:52 2016
 Total Scan time:  1.940 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]