FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5558, 573 aa
  1>>>pF1KB5558 573 - 573 aa - 573 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1768+/-0.00122; mu= 15.0969+/- 0.074
 mean_var=79.6277+/-15.919, 0's: 0 Z-trim(102.2): 31  B-trim: 0 in 0/48
 Lambda= 0.143728
 statistics sampled from 6826 (6848) to 6826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.548), E-opt: 0.2 (0.21), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS33357.1 HSPD1 gene_id:3329|Hs108|chr2          ( 573) 3589 754.3 8.9e-218


>>CCDS33357.1 HSPD1 gene_id:3329|Hs108|chr2               (573 aa)
 initn: 3589 init1: 3589 opt: 3589  Z-score: 4023.3  bits: 754.3 E(32554): 8.9e-218
Smith-Waterman score: 3589; 100.0% identity (100.0% similar) in 573 aa overlap (1-573:1-573)

               10        20        30        40        50        60
pF1KB5 MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 KNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLT
              490       500       510       520       530       540

              550       560       570   
pF1KB5 TAEVVVTEIPKEEKDPGMGAMGGMGGGMGGGMF
       :::::::::::::::::::::::::::::::::
CCDS33 TAEVVVTEIPKEEKDPGMGAMGGMGGGMGGGMF
              550       560       570   




573 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:06:39 2016 done: Sat Nov  5 13:06:39 2016
 Total Scan time:  3.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]