FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5556, 331 aa
  1>>>pF1KB5556 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0947+/-0.000953; mu= 1.9807+/- 0.058
 mean_var=250.6505+/-49.967, 0's: 0 Z-trim(115.0): 24  B-trim: 244 in 1/52
 Lambda= 0.081010
 statistics sampled from 15546 (15568) to 15546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.478), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS610.1 JUN gene_id:3725|Hs108|chr1              ( 331) 2171 266.0 3.1e-71
CCDS32959.1 JUND gene_id:3727|Hs108|chr19          ( 347)  731 97.7 1.5e-20
CCDS12280.1 JUNB gene_id:3726|Hs108|chr19          ( 347)  711 95.4 7.4e-20


>>CCDS610.1 JUN gene_id:3725|Hs108|chr1                   (331 aa)
 initn: 2171 init1: 2171 opt: 2171  Z-score: 1392.4  bits: 266.0 E(32554): 3.1e-71
Smith-Waterman score: 2171; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KB5 MTAKMETTFYDDALNASFLPSESGPYGYSNPKILKQSMTLNLADPVGSLKPHLRAKNSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MTAKMETTFYDDALNASFLPSESGPYGYSNPKILKQSMTLNLADPVGSLKPHLRAKNSDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LTSPDVGLLKLASPELERLIIQSSNGHITTTPTPTQFLCPKNVTDEQEGFAEGFVRALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LTSPDVGLLKLASPELERLIIQSSNGHITTTPTPTQFLCPKNVTDEQEGFAEGFVRALAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LHSQNTLPSVTSAAQPVNGAGMVAPAVASVAGGSGSGGFSASLHSEPPVYANLSNFNPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LHSQNTLPSVTSAAQPVNGAGMVAPAVASVAGGSGSGGFSASLHSEPPVYANLSNFNPGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LSSGGGAPSYGAAGLAFPAQPQQQQQPPHHLPQQMPVQHPRLQALKEEPQTVPEMPGETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LSSGGGAPSYGAAGLAFPAQPQQQQQPPHHLPQQMPVQHPRLQALKEEPQTVPEMPGETP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PLSPIDMESQERIKAERKRMRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PLSPIDMESQERIKAERKRMRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANM
              250       260       270       280       290       300

              310       320       330 
pF1KB5 LREQVAQLKQKVMNHVNSGCQLMLTQQLQTF
       :::::::::::::::::::::::::::::::
CCDS61 LREQVAQLKQKVMNHVNSGCQLMLTQQLQTF
              310       320       330 

>>CCDS32959.1 JUND gene_id:3727|Hs108|chr19               (347 aa)
 initn: 837 init1: 502 opt: 731  Z-score: 482.6  bits: 97.7 E(32554): 1.5e-20
Smith-Waterman score: 989; 53.0% identity (70.7% similar) in 362 aa overlap (5-331:1-347)

               10        20         30                       40    
pF1KB5 MTAKMETTFYDDALNASFLPSESGPYG-YSNPKIL---------------KQSMTLNLAD
           ::: :: :   ...  . ::  : ...:  :               :...::.:..
CCDS32     METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
                   10        20        30        40        50      

            50                      60        70        80         
pF1KB5 PVGS-LKPH-------LRAKNSD-------LLTSPDVGLLKLASPELERLIIQSSNGHIT
        :.. :::        ::: ..        ::.:::.::::::::::::::::: :: .:
CCDS32 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGLLKLASPELERLIIQS-NGLVT
         60        70        80        90       100       110      

      90       100       110       120       130       140         
pF1KB5 TTPTPTQFLCPKNVTDEQEGFAEGFVRALAELHSQNTLPSVTSAAQPVNGAGMVAPAVAS
       :::: .::: :: ...:.. ::::::.:: .::.:: : . ..::  . .::  .:.  .
CCDS32 TTPTSSQFLYPKVAASEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAG--GPS--G
         120       130       140       150       160         170   

     150       160         170       180       190       200       
pF1KB5 VAGGSGSGGFSASLHSEP--PVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQQQP
       .: ::.  :  :   . :  :::::::..  ::    :::   ::: .:: :.:     :
CCDS32 TATGSAPPGELAPAAAAPEAPVYANLSSYAGGA----GGAG--GAATVAFAAEPVPFPPP
             180       190       200             210       220     

       210       220       230         240       250       260     
pF1KB5 PHHLPQQMPVQHPRLQALKEEPQTVPEMP--GETPPLSPIDMESQERIKAERKRMRNRIA
       :   :  .    ::: :::.::::::..:  ::.::::::::..::::::::::.:::::
CCDS32 PP--PGALG--PPRLAALKDEPQTVPDVPSFGESPPLSPIDMDTQERIKAERKRLRNRIA
           230         240       250       260       270       280 

         270       280       290       300       310       320     
pF1KB5 ASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQLMLT
       ::::::::::::.::::::::::.::.::::::..::::::::::::..::::::::.  
CCDS32 ASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQKVLSHVNSGCQLLPQ
             290       300       310       320       330       340 

         330 
pF1KB5 QQLQTF
       .:. ..
CCDS32 HQVPAY
             

>>CCDS12280.1 JUNB gene_id:3726|Hs108|chr19               (347 aa)
 initn: 876 init1: 454 opt: 711  Z-score: 470.0  bits: 95.4 E(32554): 7.4e-20
Smith-Waterman score: 859; 47.7% identity (68.2% similar) in 365 aa overlap (1-331:1-347)

               10         20        30        40        50         
pF1KB5 MTAKMETTFY-DDALNASFLPSESGPYGYSNPKILKQSMTLNLADPVGSLK-PHLRAKNS
       : .:::  :: ::. .:.      :  .  . :.:: :...:::::  ::: :  :. . 
CCDS12 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKPSLAVNLADPYRSLKAPGARGPGP
               10        20        30        40        50        60

             60           70        80        90        100        
pF1KB5 D------LLTSP--DVGL-LKLASPELERLIIQSSNGHITTTPTPT-QFLCPKN------
       .       ...   :.:  ::::: ::::::. .::: :::::::  :.. :..      
CCDS12 EGGGGGSYFSGQGSDTGASLKLASSELERLIVPNSNGVITTTPTPPGQYFYPRGGGSGGG
               70        80        90       100       110       120

                   110       120         130       140       150   
pF1KB5 -------VTDEQEGFAEGFVRALAELHSQN--TLPSVTSAAQPVNGAGMVAPAVASVAGG
              ::.::::::.:::.:: .::..:  : :.:.       ::    ::       
CCDS12 AGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSL------GATGGPPA-------
              130       140       150             160              

           160       170       180       190       200             
pF1KB5 SGSGGFSASLHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQPQQQ--QQPPH--
        : ::  :.    ::::.:::...:.. ::::.. . :. : ..:.   .   . ::   
CCDS12 -GPGGVYAG-PEPPPVYTNLSSYSPASASSGGAGAAVGT-GSSYPTTTISYLPHAPPFAG
        170        180       190       200        210       220    

      210       220       230         240       250       260      
pF1KB5 -HLPQQMPVQHPRLQALKEEPQTVPEMPGE--TPPLSPIDMESQERIKAERKRMRNRIAA
        : : :. . .   ...:::::::::  ..  :::.:::.::.:::::.::::.:::.::
CCDS12 GH-PAQLGLGRGA-STFKEEPQTVPEARSRDATPPVSPINMEDQERIKVERKRLRNRLAA
           230        240       250       260       270       280  

        270       280       290       300       310       320      
pF1KB5 SKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQLMLTQ
       .::::::::::::::.:::::::.:. :.:::..:::::::::::::.::..::::.:  
CCDS12 TKCRKRKLERIARLEDKVKTLKAENAGLSSTAGLLREQVAQLKQKVMTHVSNGCQLLLGV
            290       300       310       320       330       340  

        330 
pF1KB5 QLQTF
       . ..:
CCDS12 KGHAF
            




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:34:48 2016 done: Thu Nov  3 17:34:49 2016
 Total Scan time:  3.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]