FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5543, 346 aa
  1>>>pF1KB5543 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4700+/-0.000792; mu= 15.6098+/- 0.048
 mean_var=69.1327+/-13.567, 0's: 0 Z-trim(107.7): 16  B-trim: 0 in 0/54
 Lambda= 0.154253
 statistics sampled from 9741 (9749) to 9741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS3829.1 AGA gene_id:175|Hs108|chr4              ( 346) 2347 531.2  5e-151
CCDS13116.1 TASP1 gene_id:55617|Hs108|chr20        ( 420)  274 69.9 4.4e-12


>>CCDS3829.1 AGA gene_id:175|Hs108|chr4                   (346 aa)
 initn: 2347 init1: 2347 opt: 2347  Z-score: 2824.9  bits: 531.2 E(32554): 5e-151
Smith-Waterman score: 2347; 99.7% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB5 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCG
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS38 HTTHTLLVGESATTFAQSMGFINEDLSTTASQALHSDWLARNCQPNYWRNVIPDPSKYCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
              250       260       270       280       290       300

              310       320       330       340      
pF1KB5 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
              310       320       330       340      

>>CCDS13116.1 TASP1 gene_id:55617|Hs108|chr20             (420 aa)
 initn: 153 init1: 153 opt: 274  Z-score: 330.4  bits: 69.9 E(32554): 4.4e-12
Smith-Waterman score: 274; 28.3% identity (55.5% similar) in 272 aa overlap (37-297:66-327)

         10        20        30        40        50        60      
pF1KB5 LPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCER
                                     : : . : . : .:. : ::: .  :. : 
CCDS13 YKEKRGGFVLVHAGAGYHSESKAKEYKHVCKRACQKAIEKLQAGALATDAVTA--ALVEL
          40        50        60        70        80          90   

         70         80        90       100       110        120    
pF1KB5 EQCD-GSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVL-EHTTH
       :.    ..:.:.. . :::   :: :::: ... :::: :  ::: ..:: ..: :    
CCDS13 EDSPFTNAGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKG
           100       110       120       130       140       150   

          130       140       150       160       170         180  
pF1KB5 TLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNV--IPDPSKYCGPY
        : .:.    :  . :     .. .  .   .   .:     . ::   .    .    .
CCDS13 KLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDF
           160       170       180       190       200       210   

            190       200        210       220       230       240 
pF1KB5 KPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIP
             .:.    .: :.: :  ::.: ::. . :..::..:..:. .:  ::::.. . 
CCDS13 MQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALY
           220           230       240       250       260         

             250             260       270       280       290     
pF1KB5 GAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQK
       : : .:..:..      :....: :. :.: . . .  . .. .::   : : ..  .:.
CCDS13 GCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ-AED---AHQALLETMQN
     270       280       290       300       310           320     

         300       310       320       330       340               
pF1KB5 HFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI         
       .:                                                          
CCDS13 KFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLLVEFLWSHTTESMCVGYMSAQ
         330       340       350       360       370       380     




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:05:19 2016 done: Sat Nov  5 13:05:19 2016
 Total Scan time:  2.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]