Result of FASTA (omim) for
pF1KB5542
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5542, 358 aa
1>>>pF1KB5542 358 - 358 aa - 358 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0637+/-0.000361; mu= 18.0430+/- 0.022
mean_var=76.9060+/-16.373, 0's: 0 Z-trim(115.2): 147 B-trim: 2291 in 2/52
Lambda= 0.146249
statistics sampled from 25243 (25430) to 25243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.298), width: 16
Scan time: 8.330
The best scores are: opt bits E(85289)
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 2453 527.0 2.4e-149
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 2364 508.2 1.1e-143
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 2327 500.5 2.7e-141
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 2327 500.5 2.7e-141
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 1925 415.6 8.5e-116
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 1894 409.1 7.9e-114
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 1885 407.2 3e-113
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 1876 405.3 1.1e-112
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 1876 405.3 1.2e-112
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 1844 398.5 1.2e-110
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 1840 397.7 2.1e-110
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1812 391.8 1.2e-108
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 1812 391.8 1.2e-108
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1726 373.7 3.9e-103
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1726 373.7 4.1e-103
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1725 373.4 4.1e-103
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1726 373.7 4.2e-103
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1726 373.7 4.3e-103
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1707 369.6 5.7e-102
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1702 368.6 1.4e-101
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1633 354.0 2.7e-97
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1192 260.8 2.2e-69
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1193 261.1 2.4e-69
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 899 199.0 9.6e-51
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 801 178.3 1.6e-44
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 801 178.3 1.6e-44
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 793 176.8 6.4e-44
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 723 162.0 1.8e-39
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 723 162.0 1.8e-39
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 701 157.3 4.4e-38
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 680 152.9 9.3e-37
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 618 139.8 7.6e-33
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 558 127.1 4.4e-29
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 551 125.6 1.2e-28
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 516 118.2 2e-26
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 514 117.7 2.4e-26
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 510 117.1 6.6e-26
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 508 116.7 8.9e-26
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 505 116.0 1.2e-25
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 472 109.0 1.6e-23
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 455 105.5 2e-22
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 455 105.5 2e-22
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 408 95.5 1.6e-19
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 379 89.1 7.5e-18
NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235) 379 89.3 9.6e-18
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 379 89.3 9.6e-18
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 377 88.9 1.4e-17
NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 358 84.7 1.7e-16
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 344 81.9 1.7e-15
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 344 82.0 2.1e-15
>>NP_005507 (OMIM: 143010) HLA class I histocompatibilit (358 aa)
initn: 2453 init1: 2453 opt: 2453 Z-score: 2802.1 bits: 527.0 E(85289): 2.4e-149
Smith-Waterman score: 2453; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)
10 20 30 40 50 60
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
310 320 330 340 350
>>XP_016866298 (OMIM: 143010) PREDICTED: HLA class I his (359 aa)
initn: 2364 init1: 2364 opt: 2364 Z-score: 2700.6 bits: 508.2 E(85289): 1.1e-143
Smith-Waterman score: 2364; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAECKCGAGAWRSSPTL
310 320 330 340 350
>>XP_016866296 (OMIM: 143010) PREDICTED: HLA class I his (399 aa)
initn: 2327 init1: 2327 opt: 2327 Z-score: 2657.8 bits: 500.5 E(85289): 2.7e-141
Smith-Waterman score: 2327; 100.0% identity (100.0% similar) in 337 aa overlap (22-358:63-399)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDD
::::::::::::::::::::::::::::::
XP_016 VERGRPGGGEGLGEPRREEGRADLSPSSPPGSHSLKYFHTSVSRPGRGEPRFISVGYVDD
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB5 TQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEA
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB5 GSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDA
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB5 SEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYP
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB5 AEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPV
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB5 TLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQ
340 350 360 370 380 390
pF1KB5 GSESHSL
:::::::
XP_016 GSESHSL
>>XP_016866297 (OMIM: 143010) PREDICTED: HLA class I his (399 aa)
initn: 2327 init1: 2327 opt: 2327 Z-score: 2657.8 bits: 500.5 E(85289): 2.7e-141
Smith-Waterman score: 2327; 100.0% identity (100.0% similar) in 337 aa overlap (22-358:63-399)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDD
::::::::::::::::::::::::::::::
XP_016 VERGRPGGGEGLGEPRREEGRADLSPSSPPGSHSLKYFHTSVSRPGRGEPRFISVGYVDD
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB5 TQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQFVRFDNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEA
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB5 GSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSHTLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDA
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB5 SEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SEAEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYP
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB5 AEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPV
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB5 TLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLRWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQ
340 350 360 370 380 390
pF1KB5 GSESHSL
:::::::
XP_016 GSESHSL
>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa)
initn: 1944 init1: 1922 opt: 1925 Z-score: 2199.9 bits: 415.6 E(85289): 8.5e-116
Smith-Waterman score: 1925; 78.8% identity (91.8% similar) in 354 aa overlap (1-354:4-357)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF
:. ::::::: :::::::::::::..:: ::::::::::::::.::::::::::::
NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ
:.:::: :: :::::.:::: ::::.:::... .: ::.: :::::::::::::::.:
NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ
:.::..: ::::::::.: :::::::..::::::::::.: ::::...: . : :::.
NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
::::. ::::::..:::.::::: . .:::::.:::::::::::::::::::::::::::
NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP
::.::: .:::::::::::::::::::::::::::::::::::::::::::.:.::::.
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 ASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHS
.::::::::::::::::::.:..:::::::.::.::: :::::..: :::::::.
NP_002 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
310 320 330 340 350 360
pF1KB5 L
NP_002 TACKV
>>NP_005505 (OMIM: 106300,142830,608579) major histocomp (362 aa)
initn: 1909 init1: 1885 opt: 1894 Z-score: 2164.6 bits: 409.1 E(85289): 7.9e-114
Smith-Waterman score: 1894; 77.4% identity (91.5% similar) in 354 aa overlap (1-354:4-357)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF
:. :.::::: :::::.:::::::..::.:::::::::::::::::::::::::::
NP_005 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ
:.:::::: :::::.:::: :::::.:. . :: : .::.::::::::::::::::
NP_005 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ
:.::..:::::.:::..:.:::::::..::::::::::.::::::...: . : :::..
NP_005 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
::::: :::::..:::.::. : . .:::::::::::::::::::::::::::::::::
NP_005 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP
::.::: .:::::::::::::: ::::::::::::::::::::::::::::.:.::::.:
NP_005 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 ASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHS
.:: :.:::::.:::..:. :: :::::::. :.:::::::::::.: :::::::.
NP_005 SSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSL
310 320 330 340 350 360
pF1KB5 L
NP_005 TA
>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa)
initn: 1954 init1: 1882 opt: 1885 Z-score: 2154.3 bits: 407.2 E(85289): 3e-113
Smith-Waterman score: 1885; 77.1% identity (91.0% similar) in 354 aa overlap (1-354:4-357)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF
:. ::::::: :::::::::::::..:: ::::::::::::::.::::::::::::
NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ
:.:::: .: :::::.:::: ::::.:::. . .: :.:: :::::::::: ::::.:
NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ
:.::..::::::::::.: :::::::..::::::::::.: ::::...: . . ::..
NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
:.::: ::. :..:::.::::: . .:::::.:::::::::::::::::::::::::::
NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP
::.::: .:::::::::::::::::::::::::::::::::::::::::::.:.::::.
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 ASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHS
.::::::::::::::::::.:..:::::::.::.::: :::::..: :::::::.
NP_001 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
310 320 330 340 350 360
pF1KB5 L
NP_001 TACKV
>>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas (362 aa)
initn: 1895 init1: 1873 opt: 1876 Z-score: 2144.0 bits: 405.3 E(85289): 1.1e-112
Smith-Waterman score: 1876; 76.6% identity (90.7% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
:. ::.:::: :::::::::::::..:: ::::::::::::::.:::::::::::::.:
XP_016 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
::: :: :::::.:::: :::: :::... .: ::.: :::::::::::::::.: :.
XP_016 AASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
::..: : ::::::.:.:::::::..:.::::::::.: ::: ...: . : ::. :::
XP_016 GCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
:: ::::::..:::.::::: . . ::::.::: .::::::::::::.:::::::::::.
XP_016 LEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
::: .::::::::::::::::::::::::::::.::::::::::::::.:.::::.:.::
XP_016 DGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEPSSQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
::::::::::::::.:.:..:::::::.::.::: ::::::.: :::::::.
XP_016 PTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSLTAC
310 320 330 340 350 360
XP_016 KV
>>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas (391 aa)
initn: 1895 init1: 1873 opt: 1876 Z-score: 2143.6 bits: 405.3 E(85289): 1.2e-112
Smith-Waterman score: 1876; 76.6% identity (90.7% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND
:. ::.:::: :::::::::::::..:: ::::::::::::::.:::::::::::::.:
XP_005 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH
::: :: :::::.:::: :::: :::... .: ::.: :::::::::::::::.: :.
XP_005 AASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY
::..: : ::::::.:.:::::::..:.::::::::.: ::: ...: . : ::. :::
XP_005 GCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQ
:: ::::::..:::.::::: . . ::::.::: .::::::::::::.:::::::::::.
XP_005 LEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQ
::: .::::::::::::::::::::::::::::.::::::::::::::.:.::::.:.::
XP_005 DGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEPSSQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 PTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESHSL
::::::::::::::.:.:..:::::::.::.::: ::::::.: :::::::.
XP_005 PTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSLTAC
310 320 330 340 350 360
XP_005 KGESLEGLMCVGCWAEQWTQLCYGVSFHWMY
370 380 390
>>NP_001229971 (OMIM: 142840,177900,609423) HLA class I (366 aa)
initn: 1862 init1: 1733 opt: 1844 Z-score: 2107.5 bits: 398.5 E(85289): 1.2e-110
Smith-Waterman score: 1844; 76.3% identity (90.1% similar) in 355 aa overlap (1-354:4-358)
10 20 30 40 50
pF1KB5 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF
:. .:::::: .::::.::: :::..:: :.:::::::::::::::::::::::::
NP_001 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ
:.:::::: :::::.:::: :::::::.. . :: ::.::.::::::::: ::::::
NP_001 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ
:.::.::::::.::::.: :::::::..::::::::::.::::::...: . : ::.
NP_001 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
::::: ::::::..:::.::::: . :::::::::::.::::::::::::::::::::::
NP_001 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP
::.::: .::::::::::::::::::::::::::::.:::::::.::::: ::.:: :.:
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 ASQPTIPIVGIIAGL-VLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESH
.:::::::.::.::: ::. .: ::::.:.. :.::::::::: :.: :.:::::.
NP_001 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES
310 320 330 340 350 360
pF1KB5 SL
NP_001 LITCKA
358 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:39:57 2016 done: Thu Nov 3 22:39:59 2016
Total Scan time: 8.330 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]