FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5530, 120 aa
  1>>>pF1KB5530 120 - 120 aa - 120 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4863+/-0.000559; mu= 10.7781+/- 0.034
 mean_var=71.4245+/-14.182, 0's: 0 Z-trim(113.9): 3  B-trim: 0 in 0/51
 Lambda= 0.151758
 statistics sampled from 14493 (14496) to 14493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.445), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10       ( 120)  817 186.6 3.2e-48
CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8        ( 118)  415 98.6 9.9e-22
CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5        ( 100)  364 87.4   2e-18


>>CCDS7303.1 EIF4EBP2 gene_id:1979|Hs108|chr10            (120 aa)
 initn: 817 init1: 817 opt: 817  Z-score: 979.2  bits: 186.6 E(32554): 3.2e-48
Smith-Waterman score: 817; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KB5 MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 DRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI
               70        80        90       100       110       120

>>CCDS6100.1 EIF4EBP1 gene_id:1978|Hs108|chr8             (118 aa)
 initn: 475 init1: 319 opt: 415  Z-score: 503.6  bits: 98.6 E(32554): 9.9e-22
Smith-Waterman score: 415; 57.1% identity (82.4% similar) in 119 aa overlap (4-120:2-118)

               10         20        30         40        50        
pF1KB5 MSSSAGSGHQPSQSRAIP-TRTVAISDAAQLPH-DYCTTPGGTLFSTTPGGTRIIYDRKF
          :.::. . . ::::: :: :...:..:::  :: :::::::::::::::::::::::
CCDS61   MSGGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKF
                 10        20        30        40        50        

       60        70        80        90       100       110        
pF1KB5 LLDRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEM
       :.. ::::...:::  ::.:::::::..  ..  .:... .  :. . :.: :...::::
CCDS61 LMECRNSPVTKTPPRDLPTIPGVTSPSS--DEPPMEASQSHLRNSPEDKRAGGEESQFEM
       60        70        80          90       100       110      

      120
pF1KB5 DI
       ::
CCDS61 DI
         

>>CCDS4226.1 EIF4EBP3 gene_id:8637|Hs108|chr5             (100 aa)
 initn: 449 init1: 309 opt: 364  Z-score: 444.4  bits: 87.4 E(32554): 2e-18
Smith-Waterman score: 364; 59.8% identity (82.6% similar) in 92 aa overlap (29-120:15-100)

               10        20        30        40        50        60
pF1KB5 MSSSAGSGHQPSQSRAIPTRTVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRKFLL
                                   :::  : :::::::..::::::::::::::::
CCDS42               MSTSTSCPIPGGRDQLPDCYSTTPGGTLYATTPGGTRIIYDRKFLL
                             10        20        30        40      

               70        80        90       100       110       120
pF1KB5 DRRNSPMAQTPPCHLPNIPGVTSPGTLIEDSKVEVNNLNNLNNHDRKHAVGDDAQFEMDI
       . .:::.:.:::: ::.:::::.: :      . ...:..:.... .. . :::::::::
CCDS42 ECKNSPIARTPPCCLPQIPGVTTPPT------APLSKLEELKEQETEEEIPDDAQFEMDI
         50        60        70              80        90       100




120 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:39:22 2016 done: Thu Nov  3 22:39:22 2016
 Total Scan time:  1.330 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]