FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5529, 300 aa
  1>>>pF1KB5529 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6672+/-0.000894; mu= 9.8856+/- 0.053
 mean_var=141.7849+/-29.864, 0's: 0 Z-trim(111.5): 244  B-trim: 483 in 1/50
 Lambda= 0.107711
 statistics sampled from 12084 (12390) to 12084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS13959.1 ANKRD54 gene_id:129138|Hs108|chr22     ( 300) 2003 322.5 2.4e-88


>>CCDS13959.1 ANKRD54 gene_id:129138|Hs108|chr22          (300 aa)
 initn: 2003 init1: 2003 opt: 2003  Z-score: 1699.4  bits: 322.5 E(32554): 2.4e-88
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KB5 MAAAAGDADDEPRSGHSSSEGECAVAPEPLTDAEGLFSFADFGSALGGGGAGLSGRASGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAAAGDADDEPRSGHSSSEGECAVAPEPLTDAEGLFSFADFGSALGGGGAGLSGRASGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 HLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHAQCLEAVRLEVKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHAQCLEAVRLEVKQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IIHMLREYLERLGQHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IIHMLREYLERLGQHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR
              250       260       270       280       290       300




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:52:15 2016 done: Fri Nov  4 03:52:15 2016
 Total Scan time:  2.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]