FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5521, 448 aa
  1>>>pF1KB5521 448 - 448 aa - 448 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6426+/-0.000948; mu= 15.3195+/- 0.057
 mean_var=68.6235+/-13.536, 0's: 0 Z-trim(105.2): 17  B-trim: 0 in 0/50
 Lambda= 0.154824
 statistics sampled from 8291 (8300) to 8291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.255), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS43924.1 ACOT9 gene_id:23597|Hs108|chrX         ( 448) 2989 676.9 1.1e-194
CCDS35216.1 ACOT9 gene_id:23597|Hs108|chrX         ( 439) 2666 604.8 5.6e-173
CCDS83460.1 ACOT9 gene_id:23597|Hs108|chrX         ( 379) 2511 570.1 1.3e-162


>>CCDS43924.1 ACOT9 gene_id:23597|Hs108|chrX              (448 aa)
 initn: 2989 init1: 2989 opt: 2989  Z-score: 3608.8  bits: 676.9 E(32554): 1.1e-194
Smith-Waterman score: 2989; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)

               10        20        30        40        50        60
pF1KB5 MRRAALRLCALGKGQLTPGRGLTQGPQNPKKQGIFHIHEACSSIHVNHVRDKLREIVGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRRAALRLCALGKGQLTPGRGLTQGPQNPKKQGIFHIHEACSSIHVNHVRDKLREIVGAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFVNPLIPESPEEEELFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFVNPLIPESPEEEELFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 KLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGE
              370       380       390       400       410       420

              430       440        
pF1KB5 SMLYLDGQRHFNSMSGPATLRKDYLVEP
       ::::::::::::::::::::::::::::
CCDS43 SMLYLDGQRHFNSMSGPATLRKDYLVEP
              430       440        

>>CCDS35216.1 ACOT9 gene_id:23597|Hs108|chrX              (439 aa)
 initn: 2666 init1: 2666 opt: 2666  Z-score: 3219.0  bits: 604.8 E(32554): 5.6e-173
Smith-Waterman score: 2896; 98.0% identity (98.0% similar) in 448 aa overlap (1-448:1-439)

               10        20        30        40        50        60
pF1KB5 MRRAALRLCALGKGQLTPGRGLTQGPQNPKKQGIFHIHEACSSIHVNHVRDKLREIVGAS
       :::::::::::::::::::::::::::::::::::::::         ::::::::::::
CCDS35 MRRAALRLCALGKGQLTPGRGLTQGPQNPKKQGIFHIHE---------VRDKLREIVGAS
               10        20        30                 40        50 

               70        80        90       100       110       120
pF1KB5 TNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTV
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB5 RFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHV
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB5 SWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFVNPLIPESPEEEELFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSENKGPAFVNPLIPESPEEEELFR
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB5 QGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENS
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB5 KLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEV
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB5 GSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGE
             360       370       380       390       400       410 

              430       440        
pF1KB5 SMLYLDGQRHFNSMSGPATLRKDYLVEP
       ::::::::::::::::::::::::::::
CCDS35 SMLYLDGQRHFNSMSGPATLRKDYLVEP
             420       430         

>>CCDS83460.1 ACOT9 gene_id:23597|Hs108|chrX              (379 aa)
 initn: 2511 init1: 2511 opt: 2511  Z-score: 3032.9  bits: 570.1 E(32554): 1.3e-162
Smith-Waterman score: 2511; 100.0% identity (100.0% similar) in 379 aa overlap (70-448:1-379)

      40        50        60        70        80        90         
pF1KB5 ACSSIHVNHVRDKLREIVGASTNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEV
                                     ::::::::::::::::::::::::::::::
CCDS83                               MEERKLLHSFLAKSQDGLPPRRMKDSYIEV
                                             10        20        30

     100       110       120       130       140       150         
pF1KB5 LLPLGSEPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LLPLGSEPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVD
               40        50        60        70        80        90

     160       170       180       190       200       210         
pF1KB5 KIDMCKKSLSPEQDIKFSGHVSWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KIDMCKKSLSPEQDIKFSGHVSWVGKTSMEVKMQMFQLHGDEFCPVLDATFVMVARDSEN
              100       110       120       130       140       150

     220       230       240       250       260       270         
pF1KB5 KGPAFVNPLIPESPEEEELFRQGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KGPAFVNPLIPESPEEEELFRQGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLD
              160       170       180       190       200       210

     280       290       300       310       320       330         
pF1KB5 PKTISFRSRVLPSNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 PKTISFRSRVLPSNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSF
              220       230       240       250       260       270

     340       350       360       370       380       390         
pF1KB5 GGSRPFVVAVDDIMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GGSRPFVVAVDDIMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNV
              280       290       300       310       320       330

     400       410       420       430       440        
pF1KB5 FHFTFMSEKEVPLVFPKTYGESMLYLDGQRHFNSMSGPATLRKDYLVEP
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FHFTFMSEKEVPLVFPKTYGESMLYLDGQRHFNSMSGPATLRKDYLVEP
              340       350       360       370         




448 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:03:25 2016 done: Sat Nov  5 13:03:25 2016
 Total Scan time:  3.040 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]