FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5503, 555 aa
  1>>>pF1KB5503 555 - 555 aa - 555 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8774+/-0.000444; mu= 21.0436+/- 0.027
 mean_var=66.7161+/-13.302, 0's: 0 Z-trim(110.4): 22  B-trim: 138 in 1/50
 Lambda= 0.157021
 statistics sampled from 18761 (18765) to 18761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.22), width:  16
 Scan time:  9.770

The best scores are:                                      opt bits E(85289)
NP_149975 (OMIM: 610271) GPI transamidase componen ( 555) 3583 821.2       0


>>NP_149975 (OMIM: 610271) GPI transamidase component PI  (555 aa)
 initn: 3583 init1: 3583 opt: 3583  Z-score: 4384.9  bits: 821.2 E(85289):    0
Smith-Waterman score: 3583; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555)

               10        20        30        40        50        60
pF1KB5 MAAAGAAATHLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAAAGAAATHLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LMVPVTVVFTRESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 LMVPVTVVFTRESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SGSVQEAEAMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SGSVQEAEAMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 IIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 HDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 PHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 VYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 VYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKI
              490       500       510       520       530       540

              550     
pF1KB5 FLETRKSWRKPEKTD
       :::::::::::::::
NP_149 FLETRKSWRKPEKTD
              550     




555 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:02:45 2016 done: Sat Nov  5 13:02:46 2016
 Total Scan time:  9.770 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]