FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5503, 555 aa
  1>>>pF1KB5503 555 - 555 aa - 555 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1668+/-0.00104; mu= 19.2880+/- 0.062
 mean_var=64.9992+/-13.089, 0's: 0 Z-trim(103.4): 25  B-trim: 0 in 0/50
 Lambda= 0.159082
 statistics sampled from 7394 (7400) to 7394 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.227), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS11235.1 PIGS gene_id:94005|Hs108|chr17         ( 555) 3583 831.6       0


>>CCDS11235.1 PIGS gene_id:94005|Hs108|chr17              (555 aa)
 initn: 3583 init1: 3583 opt: 3583  Z-score: 4441.3  bits: 831.6 E(32554):    0
Smith-Waterman score: 3583; 100.0% identity (100.0% similar) in 555 aa overlap (1-555:1-555)

               10        20        30        40        50        60
pF1KB5 MAAAGAAATHLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAAGAAATHLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LMVPVTVVFTRESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LMVPVTVVFTRESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SGSVQEAEAMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGSVQEAEAMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IIGRRIVQVAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNAFHSPRWGGIM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 VYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGHLASAFVASQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKI
              490       500       510       520       530       540

              550     
pF1KB5 FLETRKSWRKPEKTD
       :::::::::::::::
CCDS11 FLETRKSWRKPEKTD
              550     




555 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:02:44 2016 done: Sat Nov  5 13:02:45 2016
 Total Scan time:  3.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]