Result of FASTA (ccds) for
pF1KB5486
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5486, 193 aa
1>>>pF1KB5486 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8314+/-0.000982; mu= 10.6134+/- 0.059
mean_var=93.8390+/-18.756, 0's: 0 Z-trim(106.4): 99 B-trim: 5 in 1/52
Lambda= 0.132398
statistics sampled from 8871 (8975) to 8871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.276), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS1671.1 HPCAL1 gene_id:3241|Hs108|chr2 ( 193) 1288 256.0 1e-68
CCDS370.1 HPCA gene_id:3208|Hs108|chr1 ( 193) 1212 241.5 2.4e-64
CCDS6292.1 NCALD gene_id:83988|Hs108|chr8 ( 193) 1201 239.4 1e-63
CCDS1689.1 VSNL1 gene_id:7447|Hs108|chr2 ( 191) 919 185.5 1.7e-47
CCDS441.1 HPCAL4 gene_id:51440|Hs108|chr1 ( 191) 899 181.7 2.4e-46
CCDS6932.1 NCS1 gene_id:23413|Hs108|chr9 ( 190) 803 163.4 7.9e-41
CCDS78448.1 NCS1 gene_id:23413|Hs108|chr9 ( 172) 715 146.5 8.4e-36
CCDS11151.1 RCVRN gene_id:5957|Hs108|chr17 ( 200) 697 143.1 1e-34
CCDS64313.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 188) 565 117.9 3.8e-27
CCDS4374.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 216) 565 117.9 4.2e-27
CCDS34285.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 225) 565 118.0 4.4e-27
CCDS34286.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 227) 565 118.0 4.4e-27
CCDS7524.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 220) 546 114.3 5.3e-26
CCDS7525.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 225) 546 114.3 5.4e-26
CCDS41562.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 252) 546 114.4 5.9e-26
CCDS7522.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 270) 546 114.4 6.2e-26
CCDS7521.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 285) 546 114.4 6.5e-26
CCDS33245.1 KCNIP3 gene_id:30818|Hs108|chr2 ( 230) 538 112.8 1.6e-25
CCDS2013.1 KCNIP3 gene_id:30818|Hs108|chr2 ( 256) 538 112.8 1.7e-25
CCDS47035.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 188) 529 111.0 4.5e-25
CCDS43215.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 216) 529 111.1 5e-25
CCDS43217.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 225) 529 111.1 5.1e-25
CCDS3428.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 229) 529 111.1 5.2e-25
CCDS43216.1 KCNIP4 gene_id:80333|Hs108|chr4 ( 250) 529 111.1 5.6e-25
CCDS7523.1 KCNIP2 gene_id:30819|Hs108|chr10 ( 227) 528 110.9 5.9e-25
CCDS4865.1 GUCA1B gene_id:2979|Hs108|chr6 ( 200) 522 109.7 1.2e-24
CCDS4864.1 GUCA1A gene_id:2978|Hs108|chr6 ( 201) 490 103.6 8.2e-23
CCDS2954.1 GUCA1C gene_id:9626|Hs108|chr3 ( 209) 397 85.8 1.9e-17
CCDS64312.1 KCNIP1 gene_id:30820|Hs108|chr5 ( 241) 383 83.2 1.3e-16
>>CCDS1671.1 HPCAL1 gene_id:3241|Hs108|chr2 (193 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1347.0 bits: 256.0 E(32554): 1e-68
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
130 140 150 160 170 180
190
pF1KB5 RLLQCDPSSASQF
:::::::::::::
CCDS16 RLLQCDPSSASQF
190
>>CCDS370.1 HPCA gene_id:3208|Hs108|chr1 (193 aa)
initn: 1212 init1: 1212 opt: 1212 Z-score: 1268.6 bits: 241.5 E(32554): 2.4e-64
Smith-Waterman score: 1212; 94.3% identity (97.9% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
:::::::::::.::::::::::.. :::::::::::::::: :.::::::::::::::::
CCDS37 MGKQNSKLRPEMLQDLRENTEFSELELQEWYKGFLKDCPTGILNVDEFKKIYANFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
:::::::::::::::.:::::::::::::::::::.::::: :::::::::::::::: :
CCDS37 ASKFAEHVFRTFDTNSDGTIDFREFIIALSVTSRGRLEQKLMWAFSMYDLDGNGYISREE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS37 MLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
130 140 150 160 170 180
190
pF1KB5 RLLQCDPSSASQF
:::::::::::::
CCDS37 RLLQCDPSSASQF
190
>>CCDS6292.1 NCALD gene_id:83988|Hs108|chr8 (193 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 1257.2 bits: 239.4 E(32554): 1e-63
Smith-Waterman score: 1201; 90.7% identity (99.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
::::::::::::.::: :.:.::.::.::::::::.:::.:::...::::::.:::::::
CCDS62 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
:::::::::::::.:::::::::::::::::::::::::::::::::::::::::::..:
CCDS62 ASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
:::::::::::::::::::::::::::::.::::::::: ::::::::::::::::::::
CCDS62 MLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIV
130 140 150 160 170 180
190
pF1KB5 RLLQCDPSSASQF
::::::::::.::
CCDS62 RLLQCDPSSAGQF
190
>>CCDS1689.1 VSNL1 gene_id:7447|Hs108|chr2 (191 aa)
initn: 725 init1: 725 opt: 919 Z-score: 966.2 bits: 185.5 E(32554): 1.7e-47
Smith-Waterman score: 919; 69.7% identity (91.5% similar) in 188 aa overlap (1-186:1-188)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
:::::::: :::..:: ..:::..:::..::::::::::.:.:...::...:..::::::
CCDS16 MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQLYVKFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
:::::.:.::::: :::::::::::: :::.::::..::::.:::.::::::.: :.: :
CCDS16 ASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVE
70 80 90 100 110 120
130 140 150 160 170
pF1KB5 MLEIVQAIYKMVSSV--MKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPS
::::..::::::..: ::: :: :::.:.:::: .:: :.: ...:.:: ..::::::
CCDS16 MLEIIEAIYKMVGTVIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPS
130 140 150 160 170 180
180 190
pF1KB5 IVRLLQCDPSSASQF
:: :::::
CCDS16 IVLLLQCDIQK
190
>>CCDS441.1 HPCAL4 gene_id:51440|Hs108|chr1 (191 aa)
initn: 708 init1: 708 opt: 899 Z-score: 945.5 bits: 181.7 E(32554): 2.4e-46
Smith-Waterman score: 899; 68.6% identity (89.9% similar) in 188 aa overlap (1-186:1-188)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
::: :::: ::::.:: .::::...::..::::::::::.: :...::...: .::::::
CCDS44 MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
:::::.:.::::: :::::::::::: ::::::::..::::.::: ::::::.: :.: :
CCDS44 ASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLE
70 80 90 100 110 120
130 140 150 160 170
pF1KB5 MLEIVQAIYKMVSSV--MKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPS
::::..::::::..: :.: .: ::..:.::::..:: ..: ...:::: ..::::::
CCDS44 MLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPS
130 140 150 160 170 180
180 190
pF1KB5 IVRLLQCDPSSASQF
:: :::::
CCDS44 IVLLLQCDMQK
190
>>CCDS6932.1 NCS1 gene_id:23413|Hs108|chr9 (190 aa)
initn: 849 init1: 803 opt: 803 Z-score: 846.4 bits: 163.4 E(32554): 7.9e-41
Smith-Waterman score: 803; 61.2% identity (88.5% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
:::.::::.:::...: ..: ::..:.:.:::::.::::.:.: . :.::: .:::.::
CCDS69 MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
.::: :: .:: : :: :.: ::: :::::::: :..::.:::..::::..:::.:.:
CCDS69 PTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
::.::.:::.::......::.:.:::::.:.:: .:: : ::::.:.:: .:.:.:::::
CCDS69 MLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIV
130 140 150 160 170 180
190
pF1KB5 RLLQCDPSSASQF
. :
CCDS69 QALSLYDGLV
190
>>CCDS78448.1 NCS1 gene_id:23413|Hs108|chr9 (172 aa)
initn: 738 init1: 692 opt: 715 Z-score: 756.2 bits: 146.5 E(32554): 8.4e-36
Smith-Waterman score: 715; 61.5% identity (88.2% similar) in 161 aa overlap (23-183:5-165)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
:..:.:.:::::.::::.:.: . :.::: .:::.::
CCDS78 MATITEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGD
10 20 30 40
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
.::: :: .:: : :: :.: ::: :::::::: :..::.:::..::::..:::.:.:
CCDS78 PTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
::.::.:::.::......::.:.:::::.:.:: .:: : ::::.:.:: .:.:.:::::
CCDS78 MLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIV
110 120 130 140 150 160
190
pF1KB5 RLLQCDPSSASQF
. :
CCDS78 QALSLYDGLV
170
>>CCDS11151.1 RCVRN gene_id:5957|Hs108|chr17 (200 aa)
initn: 650 init1: 510 opt: 697 Z-score: 736.7 bits: 143.1 E(32554): 1e-34
Smith-Waterman score: 697; 50.8% identity (84.6% similar) in 195 aa overlap (1-192:1-195)
10 20 30 40 50
pF1KB5 MGKQNS-KLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYG
::...: : :.:..:. ::.:...:: ::..::::::::..: ..:..:::.:::
CCDS11 MGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRS
: . .:.::::.::.: :::.::.:..::: .:. :: .:::.::::.::.:::: ::..
CCDS11 DPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 EMLEIVQAIYKMVS--SVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDP
:.::::.::.::.. .: .:.::.:::::..::.. . :.: ::. .:::.:. ..
CCDS11 EVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANK
130 140 150 160 170 180
180 190
pF1KB5 SIVRLLQCDPSSASQF
:.::.: .:.....
CCDS11 EILRLIQFEPQKVKEKMKNA
190 200
>>CCDS64313.1 KCNIP1 gene_id:30820|Hs108|chr5 (188 aa)
initn: 565 init1: 565 opt: 565 Z-score: 600.8 bits: 117.9 E(32554): 3.8e-27
Smith-Waterman score: 565; 44.3% identity (80.1% similar) in 176 aa overlap (9-184:7-182)
10 20 30 40 50 60
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGD
::: :..:. .:.:: .::: :.:: ..::.: .. : ::.:::.:::.::
CCDS64 MTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGD
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 ASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSE
:: .:...: .:::. :.. :..:. :::. :: ...::.:.:..::.. .:::.. :
CCDS64 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 MLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIV
:..::.::: :... :.::....: .:..:: :.:: ..:.::... . : .:.
CCDS64 MMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIM
120 130 140 150 160 170
190
pF1KB5 RLLQCDPSSASQF
: ::
CCDS64 RSLQLFQNVM
180
>>CCDS4374.1 KCNIP1 gene_id:30820|Hs108|chr5 (216 aa)
initn: 565 init1: 565 opt: 565 Z-score: 600.0 bits: 117.9 E(32554): 4.2e-27
Smith-Waterman score: 565; 44.3% identity (80.1% similar) in 176 aa overlap (9-184:35-210)
10 20 30
pF1KB5 MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDC
::: :..:. .:.:: .::: :.:: ..:
CCDS43 MGTFSSLQTKQRRPSKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNEC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 PTGHLTVDEFKKIYANFFPYGDASKFAEHVFRTFDTNGDGTIDFREFIIALSVTSRGKLE
:.: .. : ::.:::.:::.:::: .:...: .:::. :.. :..:. :::. :: ..
CCDS43 PSGVVNEDTFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 QKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTDKIFRQMDT
.::.:.:..::.. .:::.. ::..::.::: :... :.::....: .:..::
CCDS43 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDK
130 140 150 160 170 180
160 170 180 190
pF1KB5 NNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF
:.:: ..:.::... . : .:.: ::
CCDS43 NKDGIVTLDEFLESCQEDDNIMRSLQLFQNVM
190 200 210
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:49:50 2016 done: Fri Nov 4 03:49:51 2016
Total Scan time: 1.930 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]