Result of FASTA (ccds) for
pF1KB5479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5479, 486 aa
1>>>pF1KB5479 486 - 486 aa - 486 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2824+/-0.000769; mu= 19.3432+/- 0.047
mean_var=84.8711+/-16.637, 0's: 0 Z-trim(110.4): 32 B-trim: 54 in 1/51
Lambda= 0.139218
statistics sampled from 11566 (11595) to 11566 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.356), width: 16
Scan time: 3.470
The best scores are: opt bits E(32554)
CCDS4229.1 APBB3 gene_id:10307|Hs108|chr5 ( 486) 3389 690.4 1.1e-198
CCDS4227.1 APBB3 gene_id:10307|Hs108|chr5 ( 493) 3365 685.6 3.2e-197
CCDS47279.1 APBB3 gene_id:10307|Hs108|chr5 ( 484) 3360 684.6 6.4e-197
CCDS4228.1 APBB3 gene_id:10307|Hs108|chr5 ( 491) 3360 684.6 6.5e-197
CCDS82918.1 APBB2 gene_id:323|Hs108|chr4 ( 737) 1089 228.6 1.8e-59
CCDS54761.1 APBB2 gene_id:323|Hs108|chr4 ( 758) 1089 228.6 1.8e-59
CCDS54762.1 APBB2 gene_id:323|Hs108|chr4 ( 759) 1089 228.6 1.8e-59
CCDS43224.1 APBB2 gene_id:323|Hs108|chr4 ( 736) 1072 225.2 1.9e-58
CCDS66015.1 APBB1 gene_id:322|Hs108|chr11 ( 451) 1021 214.8 1.6e-55
CCDS66016.1 APBB1 gene_id:322|Hs108|chr11 ( 475) 1021 214.8 1.7e-55
CCDS66017.1 APBB1 gene_id:322|Hs108|chr11 ( 490) 1021 214.8 1.7e-55
CCDS66018.1 APBB1 gene_id:322|Hs108|chr11 ( 710) 1021 214.9 2.2e-55
CCDS58114.1 APBB1 gene_id:322|Hs108|chr11 ( 488) 998 210.2 4.2e-54
CCDS31410.1 APBB1 gene_id:322|Hs108|chr11 ( 708) 998 210.3 5.5e-54
CCDS54760.1 APBB2 gene_id:323|Hs108|chr4 ( 210) 475 104.8 9.4e-23
>>CCDS4229.1 APBB3 gene_id:10307|Hs108|chr5 (486 aa)
initn: 3389 init1: 3389 opt: 3389 Z-score: 3680.3 bits: 690.4 E(32554): 1.1e-198
Smith-Waterman score: 3389; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486)
10 20 30 40 50 60
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 LVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKP
430 440 450 460 470 480
pF1KB5 SLLHMP
::::::
CCDS42 SLLHMP
>>CCDS4227.1 APBB3 gene_id:10307|Hs108|chr5 (493 aa)
initn: 3375 init1: 1893 opt: 3365 Z-score: 3654.1 bits: 685.6 E(32554): 3.2e-197
Smith-Waterman score: 3365; 98.6% identity (98.6% similar) in 493 aa overlap (1-486:1-493)
10 20 30 40 50 60
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRD-------RDFAFVASDKDSCMLKCHVFCCD
:::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS42 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRDSPISAPARDFAFVASDKDSCMLKCHVFCCD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 VPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 LYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 LWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQK
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB5 CLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFL
430 440 450 460 470 480
480
pF1KB5 DAFRLKPSLLHMP
:::::::::::::
CCDS42 DAFRLKPSLLHMP
490
>>CCDS47279.1 APBB3 gene_id:10307|Hs108|chr5 (484 aa)
initn: 1901 init1: 1901 opt: 3360 Z-score: 3648.8 bits: 684.6 E(32554): 6.4e-197
Smith-Waterman score: 3360; 99.6% identity (99.6% similar) in 486 aa overlap (1-486:1-484)
10 20 30 40 50 60
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIA
:::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS47 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRD--FAFVASDKDSCMLKCHVFCCDVPAKAIA
190 200 210 220 230
250 260 270 280 290 300
pF1KB5 SALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 VTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVR
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 LVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAA
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 RGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKP
420 430 440 450 460 470
pF1KB5 SLLHMP
::::::
CCDS47 SLLHMP
480
>>CCDS4228.1 APBB3 gene_id:10307|Hs108|chr5 (491 aa)
initn: 3367 init1: 1893 opt: 3360 Z-score: 3648.7 bits: 684.6 E(32554): 6.5e-197
Smith-Waterman score: 3360; 98.8% identity (98.8% similar) in 491 aa overlap (1-486:1-491)
10 20 30 40 50 60
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMS
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRD-----RDFAFVASDKDSCMLKCHVFCCDVP
::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS42 LVNPLDHSLIHCQPLVHIRVWGVGSSKGRPISAPARDFAFVASDKDSCMLKCHVFCCDVP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 AKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALY
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 MGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 QCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDA
430 440 450 460 470 480
480
pF1KB5 FRLKPSLLHMP
:::::::::::
CCDS42 FRLKPSLLHMP
490
>>CCDS82918.1 APBB2 gene_id:323|Hs108|chr4 (737 aa)
initn: 1048 init1: 449 opt: 1089 Z-score: 1181.3 bits: 228.6 E(32554): 1.8e-59
Smith-Waterman score: 1301; 42.8% identity (68.6% similar) in 491 aa overlap (16-486:277-737)
10 20 30 40
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTY
. :.:.:::.... :::::... : ::::
CCDS82 LHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRVSDIAGTY
250 260 270 280 290 300
50 60 70 80 90
pF1KB5 YWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRP-PKGR-----------SFSSLESS
:::.:.:.:::.::. .: . :. . : :... :.. .:..
CCDS82 YWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEDLHAATVNPDPSLKEFEGA
310 320 330 340 350 360
100 110 120 130 140
pF1KB5 LDRSNSLSWYGG------ESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCI
: ::. .. .: . .: :::::::::::::. ::::::::::.::::::
CCDS82 TLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCI
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB5 QQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSK
.::. .. . : ::::..: .::..: .:::.:.:.:..: ::.: ::::::: ..
CCDS82 RQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDN
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB5 GRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPD
::: ::.:: :::. .:::::: ::.::::::..:: .:..:..:: .... : : : .
CCDS82 GRD--FAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALA-CSSLQ
490 500 510 520 530 540
270 280 290 300 310 320
pF1KB5 PISPE--DLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNA
. :.: ::.. .. .::... :.: ::: : .:::.:: :: .: . ....
CCDS82 ERANVNLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKED
550 560 570 580 590 600
330 340 350 360 370 380
pF1KB5 WVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSF
:. . ..:.:. .: . .: ..::: : .: ::...:.:::.: :::..: : : : :
CCDS82 WLSVNMNVADATVT---VISE-KNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRF
610 620 630 640 650
390 400 410 420 430 440
pF1KB5 QCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPG
.: .:::.:.::..:::::::::..::::::: : .:
CCDS82 ECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQK---------VR-----------
660 670 680 690
450 460 470 480
pF1KB5 GPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP
: : : .: .: ::::.:..:... : . .::
CCDS82 -PPPPP--ADSVTRRVTTNVKRGVLSLIDTLKQKRPVTEMP
700 710 720 730
>>CCDS54761.1 APBB2 gene_id:323|Hs108|chr4 (758 aa)
initn: 1048 init1: 449 opt: 1089 Z-score: 1181.1 bits: 228.6 E(32554): 1.8e-59
Smith-Waterman score: 1269; 41.4% identity (65.4% similar) in 512 aa overlap (16-486:277-758)
10 20 30 40
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTY
. :.:.:::.... :::::... : ::::
CCDS54 LHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRVSDIAGTY
250 260 270 280 290 300
50 60 70
pF1KB5 YWHVPSGSTQWQRPT-----------------------------WELGDAEDPGTGTEGI
:::.:.:.:::.::. : . . : . :
CCDS54 YWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEKQPWSDFAVLNGGKINSDI
310 320 330 340 350 360
80 90 100 110 120
pF1KB5 WG------LRP-PKGRSF--SSLE-SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGW
: . : :. . : ..:. .:: :. .: . .: :::::::::::
CCDS54 WKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGW
370 380 390 400 410 420
130 140 150 160 170 180
pF1KB5 VEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLD
::. ::::::::::.::::::.::. .. . : ::::..: .::..: .:::.:.:
CCDS54 VEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMD
430 440 450 460 470 480
190 200 210 220 230 240
pF1KB5 HSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGL
.:..: ::.: ::::::: ..::: ::.:: :::. .:::::: ::.::::::..:: .
CCDS54 RSVLHSQPIVSIRVWGVGRDNGRD--FAYVARDKDTRILKCHVFRCDTPAKAIATSLHEI
490 500 510 520 530 540
250 260 270 280 290 300
pF1KB5 CAQILSERVEVSGDASCCSPDPISPE--DLPRQVELLDAVSQAAQKYEALYMGTLPVTKA
:..:..:: .... : : : . . :.: ::.. .. .::... :.: ::: :
CCDS54 CSKIMAERKNAKALA-CSSLQERANVNLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKP
550 560 570 580 590 600
310 320 330 340 350 360
pF1KB5 MGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTF
.:::.:: :: .: . .... :. . ..:.:. .: . .: ..::: : .: ::...:
CCDS54 VGMDILNSAIENLMTSSNKEDWLSVNMNVADATVT---VISE-KNEEEVLVECRVRFLSF
610 620 630 640 650
370 380 390 400 410 420
pF1KB5 IGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKA
.:::.: :::..: : : : :.: .:::.:.::..:::::::::..::::::: :
CCDS54 MGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQK-
660 670 680 690 700 710
430 440 450 460 470 480
pF1KB5 WGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLH
.: : : : .: .: ::::.:..:... : . .
CCDS54 --------VR------------PPPPP--ADSVTRRVTTNVKRGVLSLIDTLKQKRPVTE
720 730 740 750
pF1KB5 MP
::
CCDS54 MP
>>CCDS54762.1 APBB2 gene_id:323|Hs108|chr4 (759 aa)
initn: 1047 init1: 449 opt: 1089 Z-score: 1181.1 bits: 228.6 E(32554): 1.8e-59
Smith-Waterman score: 1268; 41.6% identity (65.5% similar) in 510 aa overlap (18-486:280-759)
10 20 30 40
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYW
:.:.:::.... :::::... : ::::::
CCDS54 IQNLAPSDEESSWTTLSQDSASPSSPDETADIWSDHSFQTDPDLPPGWKRVSDIAGTYYW
250 260 270 280 290 300
50 60 70
pF1KB5 HVPSGSTQWQRPT-----------------------------WELGDAEDPGTGTEGIWG
:.:.:.:::.::. : . . : . ::
CCDS54 HIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEKQPWSDFAVLNGGKINSDIWK
310 320 330 340 350 360
80 90 100 110 120
pF1KB5 ------LRP-PKGRSF--SSLE-SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVE
. : :. . : ..:. .:: :. .: . .: :::::::::::::
CCDS54 DLHAATVNPDPSLKEFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVE
370 380 390 400 410 420
130 140 150 160 170 180
pF1KB5 VPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHS
. ::::::::::.::::::.::. .. . : ::::..: .::..: .:::.:.:.:
CCDS54 MAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRS
430 440 450 460 470 480
190 200 210 220 230 240
pF1KB5 LIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCA
..: ::.: ::::::: ..:: :::.:: :::. .:::::: ::.::::::..:: .:.
CCDS54 VLHSQPIVSIRVWGVGRDNGR--DFAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICS
490 500 510 520 530 540
250 260 270 280 290 300
pF1KB5 QILSERVEVSGDASCCSPDPISPE--DLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMG
.:..:: .... : : : . . :.: ::.. .. .::... :.: ::: : .:
CCDS54 KIMAERKNAKALA-CSSLQERANVNLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVG
550 560 570 580 590 600
310 320 330 340 350 360
pF1KB5 MDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIG
::.:: :: .: . .... :. . ..:.:. .: . .: ..::: : .: ::...:.:
CCDS54 MDILNSAIENLMTSSNKEDWLSVNMNVADATVT---VISE-KNEEEVLVECRVRFLSFMG
610 620 630 640 650 660
370 380 390 400 410 420
pF1KB5 VGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWG
::.: :::..: : : : :.: .:::.:.::..:::::::::..::::::: :
CCDS54 VGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQK---
670 680 690 700 710
430 440 450 460 470 480
pF1KB5 AQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP
.: : : : .: .: ::::.:..:... : . .::
CCDS54 ------VR------------PPPPP--ADSVTRRVTTNVKRGVLSLIDTLKQKRPVTEMP
720 730 740 750
>>CCDS43224.1 APBB2 gene_id:323|Hs108|chr4 (736 aa)
initn: 1048 init1: 449 opt: 1072 Z-score: 1162.8 bits: 225.2 E(32554): 1.9e-58
Smith-Waterman score: 1284; 42.6% identity (68.4% similar) in 491 aa overlap (16-486:277-736)
10 20 30 40
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTY
. :.:.:::.... :::::... : ::::
CCDS43 LHRIQNLAPSDEESSWTTLSQDSASPSSPDETDIWSDHSFQTDPDLPPGWKRVSDIAGTY
250 260 270 280 290 300
50 60 70 80 90
pF1KB5 YWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRP-PKGR-----------SFSSLESS
:::.:.:.:::.::. .: . :. . : :... :.. .:..
CCDS43 YWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEDLHAATVNPDPSLKEFEGA
310 320 330 340 350 360
100 110 120 130 140
pF1KB5 LDRSNSLSWYGG------ESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCI
: ::. .. .: . .: :::::::::::::. ::::::::::.::::::
CCDS43 TLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCI
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB5 QQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSK
.::. .. . : ::::..: .::..: .:::.:.:.:..: ::.: ::::::: ..
CCDS43 RQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDN
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB5 GRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPD
::: ::.:: :::. .:::::: ::.::::::..:: .:..:..:: .... : : : .
CCDS43 GRD--FAYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALA-CSSLQ
490 500 510 520 530 540
270 280 290 300 310 320
pF1KB5 PISPE--DLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNA
. :.: : .. .. .::... :.: ::: : .:::.:: :: .: . ....
CCDS43 ERANVNLDVPLQ-DFPTPKTELVQKFHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKED
550 560 570 580 590 600
330 340 350 360 370 380
pF1KB5 WVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSF
:. . ..:.:. .: . .: ..::: : .: ::...:.:::.: :::..: : : : :
CCDS43 WLSVNMNVADATVT---VISE-KNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRF
610 620 630 640 650
390 400 410 420 430 440
pF1KB5 QCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPG
.: .:::.:.::..:::::::::..::::::: : .:
CCDS43 ECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQK---------VR-----------
660 670 680 690
450 460 470 480
pF1KB5 GPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP
: : : .: .: ::::.:..:... : . .::
CCDS43 -PPPPP--ADSVTRRVTTNVKRGVLSLIDTLKQKRPVTEMP
700 710 720 730
>>CCDS66015.1 APBB1 gene_id:322|Hs108|chr11 (451 aa)
initn: 681 init1: 562 opt: 1021 Z-score: 1110.3 bits: 214.8 E(32554): 1.6e-55
Smith-Waterman score: 1100; 41.8% identity (69.1% similar) in 411 aa overlap (37-417:2-405)
10 20 30 40 50
pF1KB5 MLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRP-------
...:..::::::.:.:.:::. :
CCDS66 MRVQDTSGTYYWHIPTGTTQWEPPGRASPSQ
10 20 30
60 70 80 90
pF1KB5 ----------TWELGDAEDPGTGTEGIW------------GLRPPKGRSFSSLESSLDRS
:: : :. : .: ::. :. ... .::.
CCDS66 GSSPQEESQLTWT-GFAHGEGFEDGEFWKDEPSDEAPMELGLKEPEEGTLTFPAQSLS-P
40 50 60 70 80
100 110 120 130 140 150
pF1KB5 NSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRS
. : . .. .:: ::::::::::::. ::.::::.::.::::::.::. ..
CCDS66 EPLPQEEEKLPPRNTNPGIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNL
90 100 110 120 130 140
160 170 180 190 200 210
pF1KB5 QPP-DGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFV
. : .:.::::...:. :. ....::.: ...:.: ::.. ::::::: ..::.::::.:
CCDS66 HDPMSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYV
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB5 ASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPR
: :: . ::::::: :..::: ::..:: .:..:..:: .. .. : : . :.:
CCDS66 ARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSKLVDVPF
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB5 QVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDS
:::. .. .::... :.:..::.: .:.::.: :. .. . ..:. :.:. .::. .
CCDS66 QVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPA
270 280 290 300 310 320
340 350 360 370 380 390
pF1KB5 LMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHA
.: :.:: : .: ::...:..:::: :::..: : :: : :::.:.:
CCDS66 TLTILHQQTEAV-----LGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNA
330 340 350 360 370 380
400 410 420 430 440 450
pF1KB5 GGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGG
..::::::::::..::::: :
CCDS66 ASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPK
390 400 410 420 430 440
>>CCDS66016.1 APBB1 gene_id:322|Hs108|chr11 (475 aa)
initn: 750 init1: 562 opt: 1021 Z-score: 1110.0 bits: 214.8 E(32554): 1.7e-55
Smith-Waterman score: 1169; 41.5% identity (69.6% similar) in 431 aa overlap (17-417:6-429)
10 20 30 40 50
pF1KB5 MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRP-
:..:. ...:... :: :: ...:..::::::.:.:.:::. :
CCDS66 MTQMRDSFWNPNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPG
10 20 30 40
60 70 80 90
pF1KB5 ----------------TWELGDAEDPGTGTEGIW------------GLRPPKGRSFSSLE
:: : :. : .: ::. :. ...
CCDS66 RASPSQGSSPQEESQLTWT-GFAHGEGFEDGEFWKDEPSDEAPMELGLKEPEEGTLTFPA
50 60 70 80 90 100
100 110 120 130 140 150
pF1KB5 SSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLA
.::. . : . .. .:: ::::::::::::. ::.::::.::.::::::.::.
CCDS66 QSLS-PEPLPQEEEKLPPRNTNPGIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLS
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB5 QTRSRSQPP-DGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRD
.. . : .:.::::...:. :. ....::.: ...:.: ::.. ::::::: ..::.
CCDS66 YHKNNLHDPMSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRE
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB5 RDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPIS
::::.:: :: . ::::::: :..::: ::..:: .:..:..:: .. .. : : .
CCDS66 RDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAERRNARCLVNGLSLDHSK
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB5 PEDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTM
:.: :::. .. .::... :.:..::.: .:.::.: :. .. . ..:. :.:.
CCDS66 LVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSH
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB5 LSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAF
.::. . .: :.:: : .: ::...:..:::: :::..: : :: : :
CCDS66 VSVAPATLTILHQQTEAV-----LGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMF
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB5 WCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPL
::.:.:..::::::::::..::::: :
CCDS66 WCEPNAASLSEAVQAACMLRYQKCLDARSQASTSCLPAPPAESVARRVGWTVRRGVQSLW
410 420 430 440 450 460
486 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 08:45:07 2016 done: Thu Nov 3 08:45:07 2016
Total Scan time: 3.470 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]