FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5473, 261 aa
  1>>>pF1KB5473 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4703+/-0.000932; mu= 13.8045+/- 0.056
 mean_var=66.0774+/-12.967, 0's: 0 Z-trim(104.8): 9  B-trim: 4 in 1/50
 Lambda= 0.157779
 statistics sampled from 8107 (8110) to 8107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS3594.1 ENOPH1 gene_id:58478|Hs108|chr4         ( 261) 1694 394.4 4.1e-110
CCDS75154.1 ENOPH1 gene_id:58478|Hs108|chr4        ( 173) 1122 264.1 4.5e-71


>>CCDS3594.1 ENOPH1 gene_id:58478|Hs108|chr4              (261 aa)
 initn: 1694 init1: 1694 opt: 1694  Z-score: 2090.4  bits: 394.4 E(32554): 4.1e-110
Smith-Waterman score: 1694; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB5 MVVLSVPAEVTVILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVVLSVPAEVTVILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KQAEEDAHLDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KQAEEDAHLDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTD
              190       200       210       220       230       240

              250       260 
pF1KB5 DEKTYYSLITSFSELYLPSST
       :::::::::::::::::::::
CCDS35 DEKTYYSLITSFSELYLPSST
              250       260 

>>CCDS75154.1 ENOPH1 gene_id:58478|Hs108|chr4             (173 aa)
 initn: 1122 init1: 1122 opt: 1122  Z-score: 1389.5  bits: 264.1 E(32554): 4.5e-71
Smith-Waterman score: 1122; 100.0% identity (100.0% similar) in 173 aa overlap (89-261:1-173)

       60        70        80        90       100       110        
pF1KB5 LRKQAEEDAHLDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMW
                                     ::::::::::::::::::::::::::::::
CCDS75                               MIQAVVDNVCWQMSLDRKTTALKQLQGHMW
                                             10        20        30

      120       130       140       150       160       170        
pF1KB5 RAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RAAFTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDG
               40        50        60        70        80        90

      180       190       200       210       220       230        
pF1KB5 HFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGL
              100       110       120       130       140       150

      240       250       260 
pF1KB5 TDDEKTYYSLITSFSELYLPSST
       :::::::::::::::::::::::
CCDS75 TDDEKTYYSLITSFSELYLPSST
              160       170   




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:59:35 2016 done: Sat Nov  5 12:59:36 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]