Result of FASTA (omim) for
pF1KB5457
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5457, 483 aa
1>>>pF1KB5457 483 - 483 aa - 483 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7874+/-0.000385; mu= 21.0737+/- 0.024
mean_var=64.7020+/-13.637, 0's: 0 Z-trim(111.3): 23 B-trim: 1109 in 1/53
Lambda= 0.159447
statistics sampled from 19787 (19805) to 19787 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.232), width: 16
Scan time: 8.950
The best scores are: opt bits E(85289)
NP_002622 (OMIM: 172200) 6-phosphogluconate dehydr ( 483) 3245 755.6 7.1e-218
NP_001291381 (OMIM: 172200) 6-phosphogluconate deh ( 470) 3170 738.3 1.1e-212
NP_001291380 (OMIM: 172200) 6-phosphogluconate deh ( 461) 2556 597.1 3.5e-170
>>NP_002622 (OMIM: 172200) 6-phosphogluconate dehydrogen (483 aa)
initn: 3245 init1: 3245 opt: 3245 Z-score: 4032.6 bits: 755.6 E(85289): 7.1e-218
Smith-Waterman score: 3245; 100.0% identity (100.0% similar) in 483 aa overlap (1-483:1-483)
10 20 30 40 50 60
pF1KB5 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
430 440 450 460 470 480
pF1KB5 YNA
:::
NP_002 YNA
>>NP_001291381 (OMIM: 172200) 6-phosphogluconate dehydro (470 aa)
initn: 3170 init1: 3170 opt: 3170 Z-score: 3939.5 bits: 738.3 E(85289): 1.1e-212
Smith-Waterman score: 3170; 100.0% identity (100.0% similar) in 470 aa overlap (14-483:1-470)
10 20 30 40 50 60
pF1KB5 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
10 20 30 40
70 80 90 100 110 120
pF1KB5 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
410 420 430 440 450 460
pF1KB5 YNA
:::
NP_001 YNA
470
>>NP_001291380 (OMIM: 172200) 6-phosphogluconate dehydro (461 aa)
initn: 2553 init1: 2553 opt: 2556 Z-score: 3176.3 bits: 597.1 E(85289): 3.5e-170
Smith-Waterman score: 3047; 95.4% identity (95.4% similar) in 483 aa overlap (1-483:1-461)
10 20 30 40 50 60
pF1KB5 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
:::::::::::::::::::::::::::: ::::::::::
NP_001 MVSKLKKPRRIILLVKAGQAVDDFIEKL----------------------RRCRDLKAKG
70 80 90
130 140 150 160 170 180
pF1KB5 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB5 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
400 410 420 430 440 450
pF1KB5 YNA
:::
NP_001 YNA
460
483 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:46:47 2016 done: Fri Nov 4 03:46:48 2016
Total Scan time: 8.950 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]