FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5457, 483 aa
  1>>>pF1KB5457 483 - 483 aa - 483 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4992+/-0.000882; mu= 16.6192+/- 0.053
 mean_var=61.0497+/-12.550, 0's: 0 Z-trim(104.8): 18  B-trim: 0 in 0/49
 Lambda= 0.164147
 statistics sampled from 8089 (8097) to 8089 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS113.1 PGD gene_id:5226|Hs108|chr1              ( 483) 3245 777.1       0


>>CCDS113.1 PGD gene_id:5226|Hs108|chr1                   (483 aa)
 initn: 3245 init1: 3245 opt: 3245  Z-score: 4149.2  bits: 777.1 E(32554):    0
Smith-Waterman score: 3245; 100.0% identity (100.0% similar) in 483 aa overlap (1-483:1-483)

               10        20        30        40        50        60
pF1KB5 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSS
              430       440       450       460       470       480

          
pF1KB5 YNA
       :::
CCDS11 YNA
          




483 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:46:46 2016 done: Fri Nov  4 03:46:47 2016
 Total Scan time:  2.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]