Result of FASTA (ccds) for
pF1KB5456
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5456, 419 aa
1>>>pF1KB5456 419 - 419 aa - 419 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6951+/-0.00104; mu= -5.3578+/- 0.062
mean_var=363.8101+/-75.240, 0's: 0 Z-trim(114.9): 76 B-trim: 109 in 1/52
Lambda= 0.067241
statistics sampled from 15339 (15409) to 15339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.473), width: 16
Scan time: 3.570
The best scores are: opt bits E(32554)
CCDS14757.1 IKBKG gene_id:8517|Hs108|chrX ( 419) 2742 279.6 3.9e-75
CCDS48196.1 IKBKG gene_id:8517|Hs108|chrX ( 487) 2742 279.6 4.4e-75
CCDS83513.1 IKBKG gene_id:8517|Hs108|chrX ( 418) 2723 277.7 1.4e-74
CCDS48197.1 IKBKG gene_id:8517|Hs108|chrX ( 320) 1211 131.0 1.7e-30
>>CCDS14757.1 IKBKG gene_id:8517|Hs108|chrX (419 aa)
initn: 2742 init1: 2742 opt: 2742 Z-score: 1462.4 bits: 279.6 E(32554): 3.9e-75
Smith-Waterman score: 2742; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)
10 20 30 40 50 60
pF1KB5 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRARAASEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRARAASEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 ARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
310 320 330 340 350 360
370 380 390 400 410
pF1KB5 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
370 380 390 400 410
>>CCDS48196.1 IKBKG gene_id:8517|Hs108|chrX (487 aa)
initn: 2742 init1: 2742 opt: 2742 Z-score: 1461.5 bits: 279.6 E(32554): 4.4e-75
Smith-Waterman score: 2742; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:69-487)
10 20 30
pF1KB5 MNRHLWKSQLCEMVQPSGGPAADQDVLGEE
::::::::::::::::::::::::::::::
CCDS48 VPSGGERCCSRRTLVYKARAFWKGAPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEE
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB5 SPLGKPAMLHLPSEQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SPLGKPAMLHLPSEQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEK
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB5 EFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLL
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB5 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVE
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB5 AALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQA
280 290 300 310 320 330
280 290 300 310 320 330
pF1KB5 EEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQ
340 350 360 370 380 390
340 350 360 370 380 390
pF1KB5 EQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPE
400 410 420 430 440 450
400 410
pF1KB5 EPPDFCCPKCQYQAPDMDTLQIHVMECIE
:::::::::::::::::::::::::::::
CCDS48 EPPDFCCPKCQYQAPDMDTLQIHVMECIE
460 470 480
>>CCDS83513.1 IKBKG gene_id:8517|Hs108|chrX (418 aa)
initn: 1848 init1: 1848 opt: 2723 Z-score: 1452.4 bits: 277.7 E(32554): 1.4e-74
Smith-Waterman score: 2723; 99.8% identity (99.8% similar) in 419 aa overlap (1-419:1-418)
10 20 30 40 50 60
pF1KB5 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRARAASEQ
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ALREVEHLKRCQQ-MAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRARAASEQ
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 ARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 YDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPV
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 LKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
300 310 320 330 340 350
370 380 390 400 410
pF1KB5 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
360 370 380 390 400 410
>>CCDS48197.1 IKBKG gene_id:8517|Hs108|chrX (320 aa)
initn: 1197 init1: 1197 opt: 1211 Z-score: 661.2 bits: 131.0 E(32554): 1.7e-30
Smith-Waterman score: 1920; 76.4% identity (76.4% similar) in 419 aa overlap (1-419:1-320)
10 20 30 40 50 60
pF1KB5 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRARAASEQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGR-------
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 ARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQE
::::::::::::::::
CCDS48 --------------------------------------------RKLAQLQVAYHQLFQE
180
250 260 270 280 290 300
pF1KB5 YDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPV
::::::::::::::::
CCDS48 YDNHIKSSVVGSERKR--------------------------------------------
190 200
310 320 330 340 350 360
pF1KB5 LKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ----ADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIEDMRKRH
210 220 230 240 250 260
370 380 390 400 410
pF1KB5 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE
270 280 290 300 310 320
419 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:25:45 2016 done: Thu Nov 3 17:25:46 2016
Total Scan time: 3.570 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]