Result of FASTA (omim) for
pF1KB5451
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5451, 372 aa
1>>>pF1KB5451 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1025+/-0.000364; mu= 8.8918+/- 0.023
mean_var=124.2868+/-24.543, 0's: 0 Z-trim(117.7): 65 B-trim: 652 in 1/56
Lambda= 0.115043
statistics sampled from 29872 (29937) to 29872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.351), width: 16
Scan time: 7.500
The best scores are: opt bits E(85289)
NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 2370 404.3 2.3e-112
NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 1639 283.0 7.6e-76
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 1639 283.0 7.6e-76
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 1634 282.2 1.3e-75
NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 1634 282.2 1.3e-75
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 1634 282.2 1.3e-75
NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 1587 274.4 3e-73
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 1582 273.5 5.3e-73
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 1119 196.6 5.6e-50
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 1114 195.8 9.9e-50
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 976 172.8 7e-43
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 924 164.2 2.9e-40
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 919 163.4 5.2e-40
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 866 154.5 1.9e-37
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 866 154.5 1.9e-37
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 861 153.7 3.3e-37
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 861 153.7 3.4e-37
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 861 153.7 3.7e-37
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 503 94.2 2e-19
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 493 92.5 5.8e-19
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 491 92.2 7.4e-19
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 490 92.0 8.2e-19
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 490 92.0 8.2e-19
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 486 91.4 1.3e-18
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 485 91.2 1.5e-18
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 484 91.0 1.6e-18
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 484 91.0 1.6e-18
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 483 90.9 1.8e-18
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 483 90.9 1.8e-18
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 483 90.9 1.8e-18
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 483 90.9 1.8e-18
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 483 90.9 1.8e-18
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 483 90.9 1.8e-18
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 483 90.9 1.8e-18
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 483 90.9 1.8e-18
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 393 75.9 5.7e-14
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 236 49.8 3.7e-06
XP_011511231 (OMIM: 610028) PREDICTED: poly [ADP-r (1209) 214 46.8 0.00031
XP_011511230 (OMIM: 610028) PREDICTED: poly [ADP-r (1719) 214 46.9 0.00042
NP_060024 (OMIM: 610028) poly [ADP-ribose] polymer (1801) 214 46.9 0.00043
XP_011510782 (OMIM: 612066) PREDICTED: poly [ADP-r ( 355) 189 42.3 0.002
XP_011510778 (OMIM: 612066) PREDICTED: poly [ADP-r ( 628) 191 42.8 0.0026
XP_005247216 (OMIM: 612066) PREDICTED: poly [ADP-r ( 609) 189 42.5 0.0032
NP_001106995 (OMIM: 612066) poly [ADP-ribose] poly ( 678) 189 42.5 0.0035
>>NP_061119 (OMIM: 616141) core histone macro-H2A.2 [Hom (372 aa)
initn: 2370 init1: 2370 opt: 2370 Z-score: 2138.3 bits: 404.3 E(85289): 2.3e-112
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
310 320 330 340 350 360
370
pF1KB5 IYVQEMAKLDAK
::::::::::::
NP_061 IYVQEMAKLDAK
370
>>NP_613258 (OMIM: 610054) core histone macro-H2A.1 isof (372 aa)
initn: 1639 init1: 1639 opt: 1639 Z-score: 1482.6 bits: 283.0 E(85289): 7.6e-76
Smith-Waterman score: 1639; 67.9% identity (89.2% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.... .. : .::. . : ..:.: . .: ....::.: :.
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_613 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
310 320 330 340 350 360
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
NP_613 IYVQEMAKLDAN
370
>>XP_011542031 (OMIM: 610054) PREDICTED: core histone ma (372 aa)
initn: 1639 init1: 1639 opt: 1639 Z-score: 1482.6 bits: 283.0 E(85289): 7.6e-76
Smith-Waterman score: 1639; 67.9% identity (89.2% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.... .. : .::. . : ..:.: . .: ....::.: :.
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
310 320 330 340 350 360
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
XP_011 IYVQEMAKLDAN
370
>>XP_011542032 (OMIM: 610054) PREDICTED: core histone ma (371 aa)
initn: 941 init1: 941 opt: 1634 Z-score: 1478.2 bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.. :. : :: .:. ..: . :..: . .: ....::.: :.
XP_011 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
XP_011 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_011 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
XP_011 IYVQEMAKLDAN
360 370
>>NP_004884 (OMIM: 610054) core histone macro-H2A.1 isof (371 aa)
initn: 941 init1: 941 opt: 1634 Z-score: 1478.2 bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
NP_004 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_004 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.. :. : :: .:. ..: . :..: . .: ....::.: :.
NP_004 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_004 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
NP_004 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_004 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
NP_004 IYVQEMAKLDAN
360 370
>>NP_001035248 (OMIM: 610054) core histone macro-H2A.1 i (371 aa)
initn: 941 init1: 941 opt: 1634 Z-score: 1478.2 bits: 282.2 E(85289): 1.3e-75
Smith-Waterman score: 1634; 68.5% identity (89.2% similar) in 371 aa overlap (1-371:1-370)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
NP_001 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_001 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.. :. : :: .:. ..: . :..: . .: ....::.: :.
NP_001 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
NP_001 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
NP_001 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_001 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
NP_001 IYVQEMAKLDAN
360 370
>>NP_613075 (OMIM: 610054) core histone macro-H2A.1 isof (369 aa)
initn: 902 init1: 902 opt: 1587 Z-score: 1436.1 bits: 274.4 E(85289): 3e-73
Smith-Waterman score: 1587; 66.3% identity (87.3% similar) in 371 aa overlap (1-371:1-368)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
NP_613 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
NP_613 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.... .. : .::. . : ..:.: . .: ....::.: :.
NP_613 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::...:.::. : : ...::::.... . ..:..::: ::::
NP_613 DGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYIGGEVGNTLEKKGGKE
190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
NP_613 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
NP_613 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
NP_613 IYVQEMAKLDAN
360
>>XP_005272189 (OMIM: 610054) PREDICTED: core histone ma (368 aa)
initn: 1444 init1: 749 opt: 1582 Z-score: 1431.6 bits: 273.5 E(85289): 5.3e-73
Smith-Waterman score: 1582; 66.8% identity (87.3% similar) in 371 aa overlap (1-371:1-367)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
XP_005 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_005 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.. :. : :: .:. ..: . :..: . .: ....::.: :.
XP_005 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::...:.::. : : ...::::.... . ..:..::: ::::
XP_005 DGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYIGGEVGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: :::: . :: :::::::. : ::.::::: ::.:.::::.
XP_005 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG
:.::::::.::: . :::: ::::::::. :::::..: .. .::.:.:::.::::::::
XP_005 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
300 310 320 330 340 350
370
pF1KB5 IYVQEMAKLDAK
:::::::::::
XP_005 IYVQEMAKLDAN
360
>>XP_011542033 (OMIM: 610054) PREDICTED: core histone ma (270 aa)
initn: 1119 init1: 1119 opt: 1119 Z-score: 1018.3 bits: 196.6 E(85289): 5.6e-50
Smith-Waterman score: 1119; 65.7% identity (89.4% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.... .. : .::. . : ..:.: . .: ....::.: :.
XP_011 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: ..: ::
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS
250 260 270
>>XP_011542034 (OMIM: 610054) PREDICTED: core histone ma (269 aa)
initn: 818 init1: 741 opt: 1114 Z-score: 1013.8 bits: 195.8 E(85289): 9.9e-50
Smith-Waterman score: 1114; 66.4% identity (89.4% similar) in 265 aa overlap (1-265:1-264)
10 20 30 40 50 60
pF1KB5 MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI
::.:.:::: .: ::::.:::::::::..::.::: ::::.::::::::::.:::.:::
XP_011 MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT
:::::::::::::.:..:::::::::::::::::::::::::::::: :::::::::::.
XP_011 LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG
::: :.:..::: :.. :. : :: .:. ..: . :..: . .: ....::.: :.
XP_011 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE
::::.::.::: :::::.: .:.::......::.:..::.:.::::.:.:..::: ::::
XP_011 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA
:.:.: ::::..:::::: ..: ::
XP_011 FVEAVLELRKKNGPLEVAGGTVFQSRQQLS
240 250 260
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:49:15 2016 done: Sat Nov 5 12:49:16 2016
Total Scan time: 7.500 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]