FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5445, 271 aa
  1>>>pF1KB5445 271 - 271 aa - 271 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3673+/-0.000284; mu= 12.3446+/- 0.018
 mean_var=109.5964+/-21.507, 0's: 0 Z-trim(120.7): 2  B-trim: 11 in 1/56
 Lambda= 0.122511
 statistics sampled from 36225 (36227) to 36225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.425), width:  16
 Scan time:  8.160

The best scores are:                                      opt bits E(85289)
NP_982278 (OMIM: 611666) phospholipid phosphatase  ( 295)  829 156.3 6.1e-38


>>NP_982278 (OMIM: 611666) phospholipid phosphatase 6 [H  (295 aa)
 initn: 827 init1: 808 opt: 829  Z-score: 802.2  bits: 156.3 E(85289): 6.1e-38
Smith-Waterman score: 832; 49.6% identity (73.7% similar) in 266 aa overlap (6-271:46-292)

                                        10        20        30     
pF1KB5                          MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEP
                                     ::: : : . .  ::   : .   . :  :
NP_982 SASSSSSSPGSPAHGGGGGGSRFEFQSLLSSRATAVDPTCARLRA---SESPVHRRGSFP
          20        30        40        50        60           70  

          40        50        60        70        80        90     
pF1KB5 RSSGRKASGPSAQPPPAGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKR
        .    :.::: .: :             ::::: :.::::: :::. ::::::. .::.
NP_982 LA----AAGPSQSPAPP------------LPEEDRMDLNPSFLGIALRSLLAIDLWLSKK
                 80                    90       100       110      

         100       110       120       130       140       150     
pF1KB5 LGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLD
       ::::::...::.:.: ..::. :.::::::. ::. :: .:.. ::.:::::::.:::::
NP_982 LGVCAGESSSWGSVRPLMKLLEISGHGIPWLLGTLYCLCRSDSWAGREVLMNLLFALLLD
        120       130       140       150       160       170      

         160       170       180       190       200       210     
pF1KB5 IMTVAGVQKLIKRRGPYEMSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLR
       .. :: .. :..:: : . . ...  :..: :.::.:::.:::..:.:.:.:::::.:::
NP_982 LLLVALIKGLVRRRRPAHNQMDMFVTLSVDKYSFPSGHATRAALMSRFILNHLVLAIPLR
        180       190       200       210       220       230      

         220       230       240       250       260       270    
pF1KB5 VLLVLWALCVGLSRVMIGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAW   
       ::.::::. .::::::.:::.::::  :: .::.:. .:.  :.   .  .:.  :   
NP_982 VLVVLWAFVLGLSRVMLGRHNVTDVAFGFFLGYMQYSIVDYCWLSPHNAPVLFLLWSQR
        240       250       260       270       280       290     




271 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:33:13 2016 done: Thu Nov  3 22:33:14 2016
 Total Scan time:  8.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]